Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq64520 513 2e-140 seq836247 185 1e-41 seq533404 149 7e-31 seq147675 136 4e-27 seq348021 86.0 7e-12 seq81374 86.0 7e-12 seq71880 82.4 9e-11 >seq64520 Length=3547 Score = 513 bits (568), Expect = 2e-140 Identities = 600/808 (74%), Gaps = 2/808 (0%) Strand=Plus/Plus Query 84150 AACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTG 84209 ||||| || || || || ||||||||||| | ||| || || | ||||||| |||||| Sbjct 1 AACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTG 60 Query 84210 AAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAA 84269 || |||||| |||||||| | || || || || || ||||| || || ||||||||| Sbjct 61 AAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAA 120 Query 84270 GTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCT 84329 ||||| |||||||||||||| ||||||| | || || |||||||||| ||||| Sbjct 121 GTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCC 180 Query 84330 CGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAAT 84389 | ||| | | ||| || || | ||||||||||| ||| ||||| | || |||||| Sbjct 181 CTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAAT 240 Query 84390 ACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAG 84449 |||||||| || || | ||||||||| || |||||||||||||| || || |||||||| Sbjct 241 ACACCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAAT 300 Query 84450 ACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCT 84509 |||| |||| ||||||| || || || || || || ||||| |||||||| || ||| Sbjct 301 ACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCT 360 Query 84510 TGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCA 84569 || || | || || | | ||| ||||||| || |||||||| ||||| || || ||| Sbjct 361 TGACCAATTGGGTAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCA 420 Query 84570 ACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAA 84629 ||| ||||| || |||||||| ||||| | ||| ||||| ||||||||||||||| Sbjct 421 ACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGCTCCCACTCACGACCCATGTAA 480 Query 84630 GCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGC 84689 | | |||||| | |||||| | |||| |||| |||||| |||||||| |||| | Sbjct 481 CAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAAC 540 Query 84690 CATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAG 84749 ||||| || | |||||||||||| || || || ||||| | ||| ||||| ||| Sbjct 541 CATTCATCAACGGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCAGAA 600 Query 84750 GATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGC 84809 | |||| | |||||| ||||| || |||||||| || | ||||| |||| || || Sbjct 601 GTAGGAATAATGGCACCTGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGT 660 Query 84810 TCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGAC 84868 ||||| ||||| |||||||| ||||| || ||| ||| ||| || || || || ||||| Sbjct 661 TCACGAATACCATCAATATCCACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGA- 719 Query 84869 AGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTT 84928 ||| || | | || || || ||||| | | |||||||| |||| || | |||||| Sbjct 720 AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 779 Query 84929 GTTAGTGGAGGTGACCCAATCACAGAAG 84956 | ||| ||| | ||| | ||||||| Sbjct 780 TTCGGTGCTGGTTATCCAGTTACAGAAG 807 >seq836247 Length=317 Score = 185 bits (204), Expect = 1e-41 Identities = 218/295 (74%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 84205 TGTTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATAT 84264 ||||||| |||||| |||||||| | || || || || || ||||| || || |||| Sbjct 297 TGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATAT 238 Query 84265 TATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAG 84324 |||||||||| |||||||||| ||| ||||||| | || || ||||||||| | Sbjct 237 TATAAGTTTCTTCTTCTTGACTGAATATGTAACCTTCATTAGCAGATTTATTTTCTGTGG 178 Query 84325 TTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCAC 84384 |||| | ||| | | ||| || || | ||||||||||| ||| ||||| | || Sbjct 177 TTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGT 118 Query 84385 CGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCT 84444 | |||||| || || | | ||||||||| || |||||||||||||| || || |||| Sbjct 117 CAAATACAATAGTTACGCATAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCT 58 Query 84445 GGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGA 84499 |||| |||| |||| ||||||| || || | || | || ||||| |||||||| Sbjct 57 GGAATACAATCATGAAGTTGAAAGTACCATAAATTCTTAGAGGCATACCATCAGA 3 >seq533404 Length=557 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||| ||||| || |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 328 GGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATG 387 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | |||||| ||| ||||| || | || ||||| || Sbjct 388 ATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACCGATTGGTTGAAATTG 447 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || || ||||| ||||| | ||| | ||||| ||||| || || || Sbjct 448 AAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACCTACT 507 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAA 84211 || ||||||||||| | ||| || | | ||||||| |||||||| Sbjct 508 ACAGGCCAAGCAGCTAGGAAGAAATTTAAAGAACGAGAGTTGTTGAA 554 >seq147675 Length=2096 Score = 136 bits (150), Expect = 4e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 84413 AAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCC 84472 ||| || |||||||||||||| || || |||||||| |||| |||| ||||||| || || Sbjct 1292 AAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACC 1351 Query 84473 TGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAA 84532 || || || || ||||| |||||||| || ||||| || | | || | | ||| Sbjct 1352 AGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTAGGTAGATCAAGAA 1411 Query 84533 TACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAAC-ACAGATCCATGGACGCATAC 84591 | ||||| || |||| ||| ||||| || || ||||| |||| |||| || ||||||| Sbjct 1412 AATAGCAGTCGCAGCTGTAACAGGAGCTGAATATGCAACAACAG-TCCAAGGTCGCATAC 1470 Query 84592 CGAGACGATATGAAAGTTCCCATTCACGACCCATGTA 84628 | ||| | | ||| ||||| ||||||||||| || Sbjct 1471 CTAGATGGAAACTAAGCTCCCACTCACGACCCATATA 1507 >seq348021 Length=939 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 84204 TTGTTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATA 84263 |||||||| |||||| |||||||| | || || || || || ||||| || || ||| Sbjct 937 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATA 878 Query 84264 TTATAAGTTTCCTCTTCTTGACCGAACTTGTAACC 84298 ||||||||||| |||||||||||||| | ||||| Sbjct 877 TTATAAGTTTCTTCTTCTTGACCGAATCTATAACC 843 >seq81374 Length=3119 Score = 86.0 bits (94), Expect = 7e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 84411 TGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTT 84470 || || ||||||||||||||||| ||||| || ||||| |||| |||| ||||||| || Sbjct 508 TGCAATGGATGCATAAGGATGTTGTGTTCGGCTTGGAATACAATCATGAAGTTGAAAGTA 567 Query 84471 CCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGG 84530 || | || | || ||||| |||| ||| || ||||| || | || || | | | Sbjct 568 CCAAAAATTCATAGAGGCATACCATTAGAAAAGCTTCCTTGACCAATTGGGTAGATTAAG 627 Query 84531 AATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACA 84572 || ||| || || |||||| |||| || || |||||| Sbjct 628 AAAACAATAGTCGCAACTGCAATAGGAGTTGAATATGCAACA 669 >seq71880 Length=3346 Score = 82.4 bits (90), Expect = 9e-11 Identities = 116/161 (72%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 84332 GATTAGAGAAGAAGTGACAAGTGAACCATGCAT--TGCAGAGAATAGAGCTCCACCGAAT 84389 ||||| | |||| |||| | ||||||||||| ||| | | ||||| | ||||| Sbjct 1732 GATTAAACTAGAAATGACCAAAGAACCATGCATAATGCTAAATAGGGAGCTTC--CGAAT 1675 Query 84390 ACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAG 84449 |||||| | | || | ||| |||| || |||||||||||||| || || |||||||| Sbjct 1674 ACACCAACTATGCCTAGCATTCGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAAT 1615 Query 84450 ACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCAT 84490 ||| | || ||||||| | || | || || || ||||| Sbjct 1614 GCAATCGTGAAGTTGAAAGCACCAAAAATTCCTAGAGGCAT 1574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565017368578800