Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq6274 159 4e-34 seq23164 127 2e-24 seq48246 123 3e-23 seq859725 91.5 2e-13 seq119719 87.8 2e-12 >seq6274 Length=8207 Score = 159 bits (176), Expect = 4e-34 Identities = 210/291 (72%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 48291 TCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGT 48350 |||||||| || | |||||||||||||||||||| ||||| | || | | |||| | Sbjct 4826 TCAAGAAACTCAAAGATATCAGCATGCCATGGTTCCAAATAAACAGCAAATGCACCCTTT 4885 Query 48351 CGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGG 48410 | |||| ||||||||| || | ||||| ||||| | ||| | || | |||||||| Sbjct 4886 CTTTTACCACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGCAACATTGGA 4945 Query 48411 ACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTA 48470 | ||||||||| ||| | ||||| || || || ||||||||| | ||||| |||||| Sbjct 4946 ATAATACCATTAGATGTTCCATTTGTGCCACGTATGTAACTTCCAGTTGCTCTGATATTA 5005 Query 48471 CTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTA 48530 | || | ||| ||||| ||||| ||| || | |||||| ||| | ||| Sbjct 5006 TGCACAGAGACACCAATACCCCCTGCTGATTTGCTGATAACAGCACATTCTTTTAAAGTA 5065 Query 48531 TCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 ||||| || ||||| || ||||||||| |||| || || ||||| ||| Sbjct 5066 TCATAGATGCCTTCAATGCTATCATCTTTCATGCATATCAGGAAACAGCTA 5116 >seq23164 Length=5532 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||||| ||| || | || ||||||||||| | |||||| | | ||| | || | | Sbjct 1531 GTTCCTGCATTGAAAAGGGTGGGAGATGCATGTGTGAACCATCTTTGTGACATTAAATGA 1472 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 ||||| | |||||||| || ||||| | ||| || || | || || | ||||||| Sbjct 1471 TATGTCTTGATAACAGATTCAATATCATTCTTATGAATTCCAACAGCAACCCTCATTAAC 1412 Query 48720 ATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAAT 48779 |||| ||||||||||||||||| | || || ||||| ||||| ||| |||| | Sbjct 1411 ATATGTTGAGGTCTTTCAACAACCCTTCCATGGATCTTCAAGAGATAAGATCTTTCAAGA 1352 Query 48780 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATT 48827 ||||| ||||||||||| | || |||||| ||||| |||||| Sbjct 1351 GTTTTGAAACCAAAATAATCATAGTCAAAGTCACGATCATATATAATT 1304 Score = 102 bits (112), Expect = 9e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||||||||| || | ||| | |||||||| ||| | || | |||||||| |||||||| Sbjct 1869 ACCTCCTTGGTCAACATAACGGGCAGTATCATTAAACACACGCAACATTGGAACAATACC 1810 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||||||| | ||||| ||||| || || |||||| | || | |||||| ||| || Sbjct 1809 ATTTGATGTTCCATTTGTTCCACGTATGTAGCTTCCAGTTGCACGAATATTATGAATAGA 1750 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACA-CCGTTTAAGGGTATCATAAA 48537 | || || || ||||| ||| || | |||||| | ||||| || ||||| | Sbjct 1749 CACTCCAATTCCTCCTGCTTGTTTGCTAATAATAGCACATTCCTTTAA-TGTGTCATATA 1691 Query 48538 TTCCTTCTATACTATCATCTATCAT 48562 | |||| || || |||||| |||| Sbjct 1690 TAGCTTCAATGCTGTCATCTTTCAT 1666 >seq48246 Length=4099 Score = 123 bits (136), Expect = 3e-23 Identities = 558/875 (64%), Gaps = 11/875 (1%) Strand=Plus/Plus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| ||||| || |||| ||||| || |||||||| || || |||| ||| || || Sbjct 1285 TTTCTGATACTCACCAACCCTTTTCTCGAAGAAATTGGTCTTCCCCTGTAACGAAATCAG 1344 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 |||||| ||||||| || || | |||| || | ||| |||| ||| | | Sbjct 1345 TTCCATCCAATCAAACGGGTTCTGGGCATTGTACAATTTCCCATATCCCAATGCACCCAA 1404 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 || ||||| || || |||| || ||| |||||| ||| | ||||| |||| | Sbjct 1405 TAACCTATCAGCAACGAATTCGATGTATTCACTCATCAGATCCCCGTTCATCCCTACAAG 1464 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 | ||||| ||||| | || ||| ||| || | || || || || | || Sbjct 1465 AGCACAAGGTAAGGCATCGCAGACGAACTCTCTTTCAATCTCCACCGCATCGGAGACGAT 1524 Query 18909 AGATACAACTCTATCTTCATT-AGGAGGGTAT--AGAAGATGTTTAAACATCAAACATGC 18965 |||| || ||| | || || | || | | |||| |||||| || Sbjct 1525 TCCCTTGACTCGTTCCTCACTCAGCTTCGTCTTCAGTA-ACCCATAAAG--CAAACACGC 1581 Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGG 19025 ||||||||| |||| |||||| |||| || ||||| || || || ||||| ||||| Sbjct 1582 AAAATCACAGTGTAATCCCTCATCTCGCGAGATTAATTCGTTCGAGAAGGTTAATCCAGG 1641 Query 19026 CATCAGTCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCAGAAAAGAATATAC 19084 ||||| || | ||| || ||||| || || | ||| || ||| |||||||| || | Sbjct 1642 CATCAACCCACGTTTCTTCAACCAAAAAATCG-CGCAGAAGCTTCCGGAAAAGAAAATCC 1700 Query 19085 CTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCC 19144 |||| || || ||||| | | | ||| || ||| | || || |||| Sbjct 1701 CTTCAACGCAAGCGAAAGCGATAATACGCTCTGCA-AAC--GTCTCCGAGCCATCGATCC 1757 Query 19145 ATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 |||| || ||||||| || ||||| | ||||| || || ||||| || | || | Sbjct 1758 ATTTGAGAGCCCAATTCGCTTTCTTCTCAACACACGGAATAGTCTCGATTGCTCGGAAGA 1817 Query 19205 GATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTG 19264 | | ||||| | || || | || | || | | ||||||||||| || | Sbjct 1818 GTCTGCTTTTCTCATTAGAGTCCTTTATGTAGGATTCCAGAAGCAAACTGTACATCTCGG 1877 Query 19265 AATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTA 19324 | || ||||| || || || ||||| |||||||| || | || || | | || | Sbjct 1878 AGTGGATATTCTCGATGGCAATCTGGAATCCGTAGAAGGCACGCGCCTCCGCAACTTGAA 1937 Query 19325 CTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAA 19384 | || | |||| | || | | ||||| ||| || ||||| || || || | Sbjct 1938 CCTCTTTCATGAATCGTCCGGCTAGGTTTTCCAAAACGATGCCATCGGAGGCGGCGAAGA 1997 Query 19385 ATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAA 19444 | || | || || | ||||| || | || | || || | | ||| | | Sbjct 1998 AGGCAAGGACGTGAGTGATAAAGTGCCTCTCGCCGTCTGTCAACGAGTCCCAGTGACGTT 2057 Query 19445 TATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACA 19504 ||||| ||| ||||| || ||||| |||||||||| ||||| || ||||| || |||| Sbjct 2058 GATCTTCAGACAAATCGACCTCTTCGGCTGTCCAAAACGAAGCTTCGGCTTTCTTGTACA 2117 Query 19505 TGTTCCATATATCACGATATTGTATAGGAAATATA 19539 | | ||| || | | | || || || || || ||| Sbjct 2118 TTTCCCAAATTTGAGGGTACTGAATTGGGAACATA 2152 >seq859725 Length=306 Score = 91.5 bits (100), Expect = 2e-13 Identities = 138/195 (71%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 18984 CTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttt 19043 ||| ||| || ||||| ||||| ||| |||||||| || || | ||||||||| || Sbjct 97 CTCATCTATAGAAATCAAATCATTGCTAAAAGTTAAACCTGGAATTAATCCTCTTTTCTT 156 Query 19044 tAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGC 19103 |||| | | ||| |||| || |||||| | ||||||||||| || | ||| | Sbjct 157 TAACAATATTATTGAAGTAACATTTCCAGAGATTAATATACCTTCAACGGAAGCATATTT 216 Query 19104 AACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG- 19162 ||||| |||| | | || | || | | || | ||||||||| || || ||||| | Sbjct 217 AACTAACCTTTAGCAAAAAGTTGCTTTAATACCACTAATCCATTTAAGAGCACAATCCGA 276 Query 19163 CCTTCTTTTTTACAC 19177 | || |||||||||| Sbjct 277 CATTTTTTTTTACAC 291 >seq119719 Length=2442 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/105 (79%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| ||||| ||||||||||| |||||||||||| ||| | || ||| || || || || Sbjct 195 ACAAGCAAAGTCACAATGTAGACCCTCGTCTCTAGATATAAGTTTATTTGAGAAAGTCAA 136 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAA 19064 || ||||| | ||| || || |||||||| ||||| ||| |||| Sbjct 135 CCCTGGCATTAATCCCCTCTTCTTTAACCAAAATATTGAA-CAAA 92 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555952935740400