Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_016571.1 Length=284757 Score E Sequences producing significant alignments: (Bits) Value seq493767 159 6e-34 seq200536 131 3e-25 seq408088 87.8 3e-12 seq110075 84.2 4e-11 >seq493767 Length=615 Score = 159 bits (176), Expect = 6e-34 Identities = 286/418 (68%), Gaps = 0/418 (0%) Strand=Plus/Minus Query 208512 ATATGTTCGTTATCTACAACGTCATCAAAGACAATGGAAGGATCGTTAACGATGTTCCTG 208571 ||||||| || | | || |||||||| || | ||||| |||||| || || || Sbjct 464 ATATGTTGATTGGCAATAATATCATCAAATACCAGTGAAGGGGAGTTAACAATATTTCTT 405 Query 208572 ATGATGTGAGTATAGCTACGACTGTGGATGGTTTCAGAGAAGCCCCAGGTCTCAGCCCAT 208631 || || |||||||| ||| || || ||||| || || ||| || ||| |||| Sbjct 404 ATTATATGAGTATAAGAACGTGAATGAATAGTTTCTGAAAAAGACCATGTTTCAATCCAT 345 Query 208632 GTTTCCAGCTCTGGGATAGAGCAGATCGGGAGTAATGCAACGTTTGGACCACGGCCCTGG 208691 |||||||| ||||| ||||| || || | || || | || |||| | || || Sbjct 344 GTTTCCAGTTCTGGAATAGAAATAATAGGTAAAAAAGCTATATTAGGACTTCTTCCTTGA 285 Query 208692 ATAGAGTCCAGTAGTGTCTGATATTTCAGGTTACTGATGAACAGGTGTTTCTCGTGATCT 208751 || || || |||| ||| |||||||| | ||||| || || | |||||| || ||||| Sbjct 284 ATTGAATCAAGTAATGTTTGATATTTTAAATTACTAATAAAAATGTGTTTTTCATGATCC 225 Query 208752 GGTAAAGCCATGTAGTCAATACGGTCACGGGAGACATCTACTTCTTCAGGACGCCAGAAG 208811 |||| | | || || || || | || | ||||| ||| ||||| | ||| || Sbjct 224 GGTAGATTTTGAAAATCTATTCGATCTCTAGAAAGATCTATTTCCTCAGGTCTCCAAAAA 165 Query 208812 AAAGAAAGTTGTTTCTCAATGAGTTTCTCAAAGATCTCATACTTCTGTTGGTCGTAACGA 208871 || || | |||||| ||||| |||| ||||| || | ||| || || || || || ||| Sbjct 164 AATGATAATTGTTTTTCAATTAGTTGTTCAAATATATTATATTTTTGCTGATCATATCGA 105 Query 208872 GAAACGTTGACGTTTTGACCCAGGAACATGTGTTCTTGTAATTGATCGTTTTTGTTTT 208929 | || || || ||| || | ||||| |||||| | ||||| |||||| |||| Sbjct 104 GCAATATTTACAGGTTGTCCAAAAAACATAGGTTCTTTAAGTTGATTGTTTTTTTTTT 47 >seq200536 Length=1633 Score = 131 bits (144), Expect = 3e-25 Identities = 334/499 (67%), Gaps = 26/499 (5%) Strand=Plus/Plus Query 207854 TACTTCTGAGTCGATCTGACCTACCAGGTAAGAAGAAACTTCTACTTCCTGAGGAGCAAC 207913 |||||| || || || || || || | |||||| || |||| ||| ||||||||| Sbjct 1107 TACTTCCGAATCAATTTGCCCAACTAAATAAGAACTAATTTCTGTTTCTTGAGGAGCAGT 1166 Query 207914 CTGAACGTTGTC---AGTTA-CCAGCCATGAGTTAATCCATGGAATTGGGTTAGAGTTGG 207969 || | | || ||||| |||| ||| ||||||| ||||| |||||||| | Sbjct 1167 TTGTATATAATCGGAAGTTAACCAGTCAT----TAATCCAAGGAATAGGGTTAGATTGTT 1222 Query 207970 TTTTGAATGGAAGATCCAAACCGATCGCCTGCATACGGATGTTGGTAATGTACTCAACAT 208029 |||| ||||| | | ||||| || || |||||||| || || || || || || | | Sbjct 1223 TTTTAAATGGCATTTTAAAACCTATTGCATGCATACGAATATTAGTTATATATTCTATGT 1282 Query 208030 ACTGGCAGAGGATCTCTTTGTTCAGACCGATCATTGAACCATCTTTGAACAGATAGTCAG 208089 |||| || | || ||||| || | || | ||||||||||| || || | ||| |||| Sbjct 1283 ACTGACAAATAATATCTTTATTTAATCCTAACATTGAACCATTTTGAAATAAATATTCAG 1342 Query 208090 CCCACTCTTTTTCTTGCTGAGC-GGTAGCAACGAACATGTCG-TA---TGACTCTTGACG 208144 |||| | ||||||||| | || | || | | ||| || | | || | | | ||| Sbjct 1343 CCCATTTTTTTTCTTGTTCCGCAGCTAAC-ATGAATATATTGATAGCTTCATTTTTG--- 1398 Query 208145 ACACTCTGCTGCAATCTCAGCCATCTCTGGATCATCTTTACCAGAGTTCATCAGGTTGAT 208204 || ||| || || ||||| | | || || |||| || | | | || || | Sbjct 1399 -CATTCTATAATGATATCTGCCATGTTTTCATTATTTTTAACATTGCTTAAAAGATTTAA 1457 Query 208205 GATGTGCTGAGTACC----AACCATGTGAAGTGCTTCGTCACGTGCGATCATTTTGATGA 208260 || || ||||| || || |||| || ||||| || ||||| || | | | || | Sbjct 1458 AATATGTTGAGTTCCTGTTAA--ATGTAAA--GCTTCATCGCGTGCTATTAATCTAATAA 1513 Query 208261 TCTTAGCGTTACCTTCCATCAGCTTACGTTCGGCAAATGCGAATGAGCAAGCGAAGGATA 208320 | || || || |||||||| | | | ||| |||||||| ||||| ||||| || || Sbjct 1514 TTTTTGCATTGCCTTCCATTAATTCTCTTTCTGCAAATGCAAATGAACAAGCAAAACTTA 1573 Query 208321 CGTAGAAACGAATAGCTTC 208339 | || || | ||| ||||| Sbjct 1574 CATAAAATCTAATTGCTTC 1592 >seq408088 Length=780 Score = 87.8 bits (96), Expect = 3e-12 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 16836 GACAGGGCTCGAACCTGTGACATACGGATTAACAGTCCGCCGTTCTACCGACTGAACTAC 16895 ||| || ||||||| ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 418 GACTGGATTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCTACCAACTGAACTAC 477 Query 16896 A 16896 | Sbjct 478 A 478 >seq110075 Length=2584 Score = 84.2 bits (92), Expect = 4e-11 Identities = 60/68 (88%), Gaps = 1/68 (1%) Strand=Plus/Plus Query 16130 CTACAGGATTCGAACCTGTGACCAATAGCTTAGAAGGCTACTGCTCTATCC-ACTGAGCT 16188 ||||||||||||||||||||||| | ||||||||||| |||||||||| |||||||| Sbjct 103 CTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAACTGAGCT 162 Query 16189 AAGAGCGC 16196 |||| ||| Sbjct 163 AAGAACGC 170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 901116663565200