Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq64520 345 1e-90 seq533404 167 7e-37 seq147675 107 6e-19 seq81374 91.5 4e-14 seq10361 87.8 5e-13 >seq64520 Length=3547 Score = 345 bits (382), Expect = 1e-90 Identities = 561/805 (70%), Gaps = 2/805 (0%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || || || |||||||| || | |||||||| || || | Sbjct 806 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 747 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACC 25920 ||||| || |||| | | || ||| | ||| ||||| | |||||||| || || || Sbjct 746 ATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATTGCTGCTCC 688 Query 25921 GCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAA 25980 || || ||||| ||||| || ||||| || ||||| || || || | || |||||||| Sbjct 687 TCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 628 Query 25981 TATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGAT 26040 ||| || ||||| || | | || | ||| || || || | ||||||||||| || Sbjct 627 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAAT 568 Query 26041 CTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTAT 26100 |||||||| | | | || || ||| |||||||||| || || ||| |||| ||| | Sbjct 567 ATGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGT 508 Query 26101 CTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAG 26160 | ||||||||| | || ||||| || || | ||||||| || || | | Sbjct 507 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCG 448 Query 26161 ACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGC 26220 || || ||| |||| ||||| |||||||||| |||| || | | || || || Sbjct 447 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGC 388 Query 26221 AGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTAT 26280 || ||||| | || || | || ||||| || ||| |||||| |||||||| || || Sbjct 387 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 328 Query 26281 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCC 26340 ||||||||||| ||||| ||| | |||||||| || || || || || || |||||||| Sbjct 327 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 268 Query 26341 ATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGG 26400 ||| || ||| || || ||||| || ||||| || | || || ||||||||| || Sbjct 267 ATTTCACATGCTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 208 Query 26401 AAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGG 26460 |||||| || || | || ||||| ||||| | | || ||| | || Sbjct 207 TTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 148 Query 26461 CTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 26520 || | || || ||||| ||||| || |||||||| || || || || || || ||||| Sbjct 147 TTACAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 88 Query 26521 GAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGC 26580 |||| || || || ||||| ||||| || ||| |||||| | |||||||| || || Sbjct 87 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGC 28 Query 26581 TACTTGGCCGGTTGTTGGCATATGG 26605 | ||||||| || || || || ||| Sbjct 27 TGCTTGGCCTGTAGTAGGTATCTGG 3 >seq533404 Length=557 Score = 167 bits (184), Expect = 7e-37 Identities = 182/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 26543 AGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATA 26602 ||||| || ||| |||||| | ||||||| || ||| ||||||| || || || || Sbjct 557 AGTTTCAACAACTCTCGTTCTTTAAATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATC 498 Query 26603 TGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAAC 26662 ||| | || || | |||||| |||| ||||| || |||||||||||||| || || ||| Sbjct 497 TGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAAC 438 Query 26663 CAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGA 26722 || || ||||| ||| | | || |||| ||| ||||||||| | | ||||| Sbjct 437 CAATCGGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGT 378 Query 26723 GCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGACTTA 26782 |||||||| || | ||||||||||| || |||||||||||||| || || || |||||| Sbjct 377 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACTTA 318 Query 26783 GC 26784 || Sbjct 317 GC 316 >seq147675 Length=2096 Score = 107 bits (118), Expect = 6e-19 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 26162 CTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCA 26221 ||||| ||| |||| |||| ||||||||||| |||| || | | || || || Sbjct 1474 CTAGGTATGCGACCTTGGACTGTTGTTGCATATTCAGCTCCTGTTACAGCTGCGACTGCT 1415 Query 26222 GTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATC 26281 | ||||| | || | | || ||||| || ||| |||||| |||||||| || || Sbjct 1414 ATTTTCTTGATCTACCTAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATT 1355 Query 26282 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCA 26341 ||||||||||| ||||| ||| | |||||||| || || || || || || ||||||||| Sbjct 1354 TCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCA 1295 Query 26342 TT 26343 || Sbjct 1294 TT 1293 >seq81374 Length=3119 Score = 91.5 bits (100), Expect = 4e-14 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 26222 GTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATC 26281 || |||||| | || || | || ||||| || ||| | |||| |||||||| | || Sbjct 632 GTTTTCTTAATCTACCCAATTGGTCAAGGAAGCTTTTCTAATGGTATGCCTCTATGAATT 573 Query 26282 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCA 26341 | ||||||||| ||||| ||| | ||||||||||| ||||| || || || ||||| ||| Sbjct 572 TTTGGTACTTTCAACTTCATGATTGTATTCCAAGCCGAACACAACATCCTTATGCATCCA 513 Query 26342 TTCCA 26346 || || Sbjct 512 TTGCA 508 >seq10361 Length=7172 Score = 87.8 bits (96), Expect = 5e-13 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 26642 CTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACA 26701 ||||||||||| || || ||||| || ||||| ||| | | || | |||| ||| Sbjct 371 CTAAATGGTTTCAATTTCAACCAATCGGTAGTTGATAGTCAAGGTCATGTAATTAGTACT 312 Query 26702 TGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCT 26761 ||||||| | | || |||||||| || | ||||||||||| || ||||||||| Sbjct 311 TGGGCTGGAATCATTAATTTTGCTAACCTTGGTATCGAAGTTATGCATGAACGTAATGCT 252 Query 26762 CATAACTTTCCACTTGACTTAGC 26784 ||||| || || || |||||||| Sbjct 251 CATAATTTCCCTCTAGACTTAGC 229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145199886962640