Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq64520 453 3e-123 seq147675 156 1e-33 seq836247 136 1e-27 seq533404 132 1e-26 seq81374 125 2e-24 seq59682 89.7 2e-13 seq348021 87.8 5e-13 >seq64520 Length=3547 Score = 453 bits (502), Expect = 3e-123 Identities = 575/791 (73%), Gaps = 0/791 (0%) Strand=Plus/Plus Query 36165 ACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGG 36224 || ||||||||||| ||||||||||||||| || || || || |||||||| ||| Sbjct 16 ACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGG 75 Query 36225 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGG 36284 ||||| | || ||||| || |||||||| || || || ||||| || ||||||||||| Sbjct 76 AAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCTTCTTGA 135 Query 36285 CCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAA 36344 |||||| | || || | || ||||||| | || ||||| | || | || Sbjct 136 CCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAG 195 Query 36345 GTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCG 36404 || || | | || ||||||||| |||| | || |||||||| || || || || Sbjct 196 GTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACGCCT 255 Query 36405 AGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTG 36464 ||||| || || || ||||||||||| ||||| || ||||| || |||| ||| || ||| Sbjct 256 AGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 315 Query 36465 AAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAG 36524 ||||| || ||||| || ||||||||||||||||| || || ||||| |||| |||||| Sbjct 316 AAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAG 375 Query 36525 ACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGC 36584 | ||||| |||||| || ||||||||||| |||||||| || ||| ||||| || Sbjct 376 ATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGT 435 Query 36585 CTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATG 36644 | |||||| || | ||||||| ||||| | || |||| |||| | | ||||| Sbjct 436 CGCATACCCAGACGGAAACTAAGCTCCCACTCACGACCCATGTAACAAGCTACACCAAGT 495 Query 36645 AGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTT 36704 | ||||| | ||||| |||| ||| || || || || |||||||| || || | || | Sbjct 496 AAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCATTCATCAACGGAT 555 Query 36705 GCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCC 36764 || |||||||| |||||||| || || | ||| || || || | || | || || Sbjct 556 GCTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCA 615 Query 36765 CCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCT 36824 || || || || ||||||||||| |||| | ||| || ||||| |||||||||||||| Sbjct 616 CCTGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCA 675 Query 36825 ATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGT 36884 |||||||| ||||| ||||||| || || || | |||| | | ||| || || | Sbjct 676 ATATCCACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAG 735 Query 36885 GCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACC 36944 | ||||||||| | || |||||||| || | || || ||||| | || || || | | Sbjct 736 GTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATC 795 Query 36945 CAGTCACATAA 36955 |||| ||| || Sbjct 796 CAGTTACAGAA 806 >seq147675 Length=2096 Score = 156 bits (172), Expect = 1e-33 Identities = 161/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 36414 AACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCT 36473 || || ||||||||||| ||||| || ||||| || |||| ||| || |||||||| || Sbjct 1293 AATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCA 1352 Query 36474 GAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAAT 36533 ||||| || ||||||||||||||||| || || ||||| |||| |||||| ||||| Sbjct 1353 GAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTAGGTAGATCAAGAAA 1412 Query 36534 ACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCT 36593 | |||| || |||| |||||| |||||||| || ||| |||| || | ||||||| Sbjct 1413 ATAGCAGTCGCAGCTGTAACAGGAGCTGAATATGCAACAACAGTCCAAGGTCGCATACCT 1472 Query 36594 AGTCTATAACTAAGTTCCCATTGTCGTCCCA 36624 || ||||||| ||||| | || |||| Sbjct 1473 AGATGGAAACTAAGCTCCCACTCACGACCCA 1503 >seq836247 Length=317 Score = 136 bits (150), Expect = 1e-27 Identities = 206/293 (70%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 36207 TTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTA 36266 || || |||||||| |||||||| | || ||||| || |||||||| || || || ||| Sbjct 295 TTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTA 236 Query 36267 TACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTT 36326 || || ||||||||||| | |||| | || || | || ||||| | | || ||| Sbjct 235 TAAGTTTCTTCTTCTTGACTGAATATGTAACCTTCATTAGCAGATTTATTTTCTGTGGTT 176 Query 36327 TCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCG 36386 || | || | || || || | | || ||||||||| |||| | || | Sbjct 175 TCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGTCA 116 Query 36387 AATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGA 36446 ||||| | || | ||||| || || || ||||||||||| ||||| || ||||| Sbjct 115 AATACAATAGTTACGCATAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGG 56 Query 36447 AAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGA 36499 || |||| ||| || |||||||| || |||| | ||||||||||||||||| Sbjct 55 AATACAATCATGAAGTTGAAAGTACCATAAATTCTTAGAGGCATACCATCAGA 3 >seq533404 Length=557 Score = 132 bits (146), Expect = 1e-26 Identities = 165/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||| ||| || ||||| || || || ||||| ||||||||||||||||| || | Sbjct 312 AGCAGCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 371 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 || |||||||||| || ||||||||||| | || | || | |||||| || Sbjct 372 GTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTAC 431 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 || || ||||| || || || || || || |||||||||||| || || | ||| || Sbjct 432 CGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGT 491 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAA 36194 | ||| || | || ||||||||||| |||||||||| |||| Sbjct 492 GAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATTTAAA 537 >seq81374 Length=3119 Score = 125 bits (138), Expect = 2e-24 Identities = 125/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 36411 TGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTC 36470 || || |||||||||||||| |||||||| || || || |||| ||| || |||||||| Sbjct 508 TGCAATGGATGCATAAGGATGTTGTGTTCGGCTTGGAATACAATCATGAAGTTGAAAGTA 567 Query 36471 CCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAG 36530 || |||| | ||||||||||||| ||| || || ||||| |||| ||||||| |||| Sbjct 568 CCAAAAATTCATAGAGGCATACCATTAGAAAAGCTTCCTTGACCAATTGGGTAGATTAAG 627 Query 36531 AATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 36572 || ||| | || |||||| ||| | |||||| || ||| Sbjct 628 AAAACAATAGTCGCAACTGCAATAGGAGTTGAATATGCAACA 669 >seq59682 Length=3695 Score = 89.7 bits (98), Expect = 2e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 36677 TCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACC 36736 ||| || | |||||| || || | || ||| ||||||| |||||||| || || | ||| Sbjct 592 TCCATTGTGTAACCATTCATCAACGGATGCTACTTCCCATATTGGGTAAAAATGCAAACC 533 Query 36737 GATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGC 36796 || || || | || | || | || || || ||||||||||| |||| | Sbjct 532 TATAGCTGCAGAAGTAGGAATAATGTCACCTCGAATAATATTGTTTCCATAAAGTAGAGA 473 Query 36797 TCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAAT 36856 ||| || |||| |||||||||| ||| ||||||| ||||| ||||||| || | || Sbjct 472 TCCAGAAACAGATTCACGAATACGATCAATATCCAATGGAGGAGCAGCAATGAAGTCGAT 413 Query 36857 TAAAAATGCTGT 36868 | |||| |||| Sbjct 412 AATAAATACTGT 401 >seq348021 Length=939 Score = 87.8 bits (96), Expect = 5e-13 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 36204 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 36263 || || || |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 937 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATA 878 Query 36264 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCA 36314 ||||| || ||||||||||| |||||| |||| || | || ||||||| Sbjct 877 TTATAAGTTTCTTCTTCTTGACCGAATCTATAACCTTCATTAGCAGATTCA 827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148889101572940