Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq64520 455 1e-123 seq836247 154 4e-33 seq533404 143 8e-30 seq147675 132 1e-26 seq81374 104 7e-18 seq71880 82.4 2e-11 >seq64520 Length=3547 Score = 455 bits (504), Expect = 1e-123 Identities = 582/797 (73%), Gaps = 6/797 (1%) Strand=Plus/Plus Query 5384 ACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATAC 5443 || || ||||||| ||| ||||||||||||||| ||| ||||| || |||||||| Sbjct 13 ACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATAT 72 Query 5444 TGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCT 5503 |||||||| | || ||||| || |||||||| || || || ||||| |||||||| ||| Sbjct 73 TGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCTTCT 132 Query 5504 TGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAA 5563 || |||||| | || || | || ||| | | || ||||| | || | | Sbjct 133 TGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTA 192 Query 5564 GAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACA 5623 || || || | | |||||||||||| || | | || |||||||| ||||| || Sbjct 193 GAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACG 252 Query 5624 CCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAG 5683 || |||||||| || || ||||||||||| ||||| || ||||||||||| | ||| ||| Sbjct 253 CCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAG 312 Query 5684 TTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGG 5743 || ||||||||||| || || ||||||||||||||| || ||||| || || | ||| Sbjct 313 TTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGG 372 Query 5744 TATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCA 5802 || | || || || | ||| || || ||||| || ||||||||||| || |||||| Sbjct 373 TAGATCAAGAAAACAGCAGT-CGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCA 431 Query 5803 TGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACC 5862 |||||||| || | | | ||||||| ||||| | || |||| |||| || | ||| Sbjct 432 AGGTCGCATACCCAGACGGAAACTAAGCTCCCACTCACGACCCATGTAACAAGCTACACC 491 Query 5863 AATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGA- 5921 || | |||||| | || | |||| || || || |||||||| | ||||||||| | Sbjct 492 AAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCATTCATCAAC 551 Query 5922 -GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACA 5980 ||| ||||||||||| || || || || || || || || || || | || | | Sbjct 552 GGAT--GCTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATA 609 Query 5981 ACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATG 6040 | ||| ||||| || || ||||||||||| ||||||||||| | || |||||||| || Sbjct 610 ATGGCACCTGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATA 669 Query 6041 CCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTT 6100 || || || || ||||| || ||||| | ||| || | |||||| ||| ||||||||| Sbjct 670 CCATCAATATCCACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAGTTGCGGTC 729 Query 6101 AAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTA 6160 || | | || ||||| || ||||||||||| || | || || ||||| | |||||| Sbjct 730 AATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTG 789 Query 6161 GTAACCCAGTCACAGAA 6177 || | ||||| |||||| Sbjct 790 GTTATCCAGTTACAGAA 806 >seq836247 Length=317 Score = 154 bits (170), Expect = 4e-33 Identities = 210/293 (72%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 5427 TGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGT 5486 |||| || |||||||| |||||||| | || ||||| || |||||||| || || || | Sbjct 297 TGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATAT 238 Query 5487 TATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTG 5546 |||| |||||||| ||||| | |||| | || || | || ||| || | || | Sbjct 237 TATAAGTTTCTTCTTCTTGACTGAATATGTAACCTTCATTAGCAGATTTATTTTCTGTGG 178 Query 5547 TTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCAC 5606 |||| | || | ||| || || | | |||||||||||| || | | || Sbjct 177 TTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGT 118 Query 5607 CGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCT 5666 | ||||| || || | |||||||| || || ||||||||||| ||||| || |||| Sbjct 117 CAAATACAATAGTTACGCATAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCT 58 Query 5667 GGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCA 5719 ||||||| | ||| ||||| ||||||||| | || | ||||||||||||||| Sbjct 57 GGAATACAATCATGAAGTTGAAAGTACCATAAATTCTTAGAGGCATACCATCA 5 >seq533404 Length=557 Score = 143 bits (158), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| |||| || || ||||| || |||||||| ||||| ||||| |||||||||||||| Sbjct 312 AGCAGCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 371 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCG-CTAGA--GTCAAC 5307 ||| |||||||| | || ||| |||||||| | ||| || | || || ||||| Sbjct 372 GTTAGCACGGTTAATGATATCAGCCCAAGT---ATTAATTACACGGCCTTGACTATCAAC 428 Query 5308 GACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGA 5367 || || || ||||| || || || || || || |||||||||||| ||| || | || Sbjct 429 TACCGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGC 488 Query 5368 GGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAA 5416 || | ||| || | || || ||||||| ||| |||||||||| |||| Sbjct 489 AGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATTTAAA 537 >seq147675 Length=2096 Score = 132 bits (146), Expect = 1e-26 Identities = 158/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 5636 AACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCA 5695 || || ||||||||||| ||||| || ||||||||||| | ||| ||||| ||||||||| Sbjct 1293 AATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCA 1352 Query 5696 GAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAAT 5755 || || || ||||||||||||||| || ||||| || || | |||| | || || Sbjct 1353 GAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTAGGTAGATCAAGAAA 1412 Query 5756 ACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCC 5814 | | ||| || || | ||| || ||||||||||| || | |||| |||||||| || Sbjct 1413 ATAGCAGT-CGCAGCTGTAACAGGAGCTGAATATGCAACAACAGTCCAAGGTCGCATACC 1471 Query 5815 TAATCTGTAACTAAGTTCCCATTGGCGTCCCA 5846 || | ||||||| ||||| | || |||| Sbjct 1472 TAGATGGAAACTAAGCTCCCACTCACGACCCA 1503 >seq81374 Length=3119 Score = 104 bits (114), Expect = 7e-18 Identities = 122/163 (75%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 5633 TGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTA 5692 || || |||||||||||||| |||||||| || |||||||| | ||| ||||| |||||| Sbjct 508 TGCAATGGATGCATAAGGATGTTGTGTTCGGCTTGGAATACAATCATGAAGTTGAAAGTA 567 Query 5693 CCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAA 5752 ||| | || | ||||||||||||| | || ||||| || || | ||||| | ||| Sbjct 568 CCAAAAATTCATAGAGGCATACCATTAGAAAAGCTTCCTTGACCAATTGGGTAGATTAAG 627 Query 5753 AATACTGAGTAG--GCTGCGGCAACCGGTGCTGAATATGCTAC 5793 || || | ||| || | |||| || | ||||||||| || Sbjct 628 AAAAC--AATAGTCGCAACTGCAATAGGAGTTGAATATGCAAC 668 >seq71880 Length=3346 Score = 82.4 bits (90), Expect = 2e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 5606 CCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCC 5665 |||||||| ||| | | || ||||| | || || ||||||||||| ||||| || ||| Sbjct 1680 CCGAATACACCAACTATGCCTAGCATTCGAAATGGGTGCATAAGGATGTTGTGCTCAGCC 1621 Query 5666 TGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATA 5713 |||||| | | | | ||||| |||| |||| | || || ||||||||| Sbjct 1620 TGGAATGCAATCGTGAAGTTGAAAGCACCAAAAATTCCTAGAGGCATA 1573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151061463137460