Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq64520 453 3e-123 seq147675 150 5e-32 seq533404 140 1e-28 seq836247 136 1e-27 seq81374 125 2e-24 seq59682 95.1 4e-15 seq348021 87.8 5e-13 >seq64520 Length=3547 Score = 453 bits (502), Expect = 3e-123 Identities = 575/791 (73%), Gaps = 0/791 (0%) Strand=Plus/Plus Query 25645 ACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGG 25704 || ||||||||||| ||||||||||||||| ||| || || || |||||||| ||| Sbjct 16 ACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGG 75 Query 25705 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGG 25764 ||||| | || ||||| || |||||||| || || || ||||| || ||||||||||| Sbjct 76 AAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCTTCTTGA 135 Query 25765 CCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAA 25824 |||||| | || || | || ||||||| | || ||||| | || | || Sbjct 136 CCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAG 195 Query 25825 GTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCG 25884 || || | | || ||||||||| |||| | || |||||||| || || || || Sbjct 196 GTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACGCCT 255 Query 25885 AGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTG 25944 ||||| || || || ||||||||||| ||||| || ||||| || |||| ||| || ||| Sbjct 256 AGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 315 Query 25945 AAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAG 26004 ||||| || ||||| || ||||||||||||||||| || || ||||| |||| |||||| Sbjct 316 AAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAG 375 Query 26005 ACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGC 26064 | ||||| |||||| || ||||||||||| |||||||| || ||| ||||| || Sbjct 376 ATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGT 435 Query 26065 CTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATG 26124 | ||| || || | ||||||| ||||| | || |||| |||| | | || | Sbjct 436 CGCATACCCAGACGGAAACTAAGCTCCCACTCACGACCCATGTAACAAGCTACACCAAGT 495 Query 26125 AGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTT 26184 | ||||| | ||||| |||| ||| || ||||| || || ||||| || || | || | Sbjct 496 AAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCATTCATCAACGGAT 555 Query 26185 GCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCC 26244 || |||||||| |||||||| || || | ||| || || ||| | || | || || Sbjct 556 GCTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCA 615 Query 26245 CCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCT 26304 ||||| || || ||||||||||| |||| | ||| || ||||| |||||||||||||| Sbjct 616 CCTGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCA 675 Query 26305 ATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGT 26364 |||||||| ||||| ||||||| || || || | |||| | | ||| || || | Sbjct 676 ATATCCACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAG 735 Query 26365 GCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACC 26424 | ||||||||| | || |||||||| || | || || ||||| | || || || | | Sbjct 736 GTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATC 795 Query 26425 CAGTCACATAA 26435 |||| ||| || Sbjct 796 CAGTTACAGAA 806 >seq147675 Length=2096 Score = 150 bits (166), Expect = 5e-32 Identities = 160/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 25894 AACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCT 25953 || || ||||||||||| ||||| || ||||| || |||| ||| || |||||||| || Sbjct 1293 AATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCA 1352 Query 25954 GAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAAT 26013 ||||| || ||||||||||||||||| || || ||||| |||| |||||| ||||| Sbjct 1353 GAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTAGGTAGATCAAGAAA 1412 Query 26014 ACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCT 26073 | |||| || |||| |||||| |||||||| || ||| |||| || | ||| ||| Sbjct 1413 ATAGCAGTCGCAGCTGTAACAGGAGCTGAATATGCAACAACAGTCCAAGGTCGCATACCT 1472 Query 26074 AGTCTATAACTAAGTTCCCATTGTCGTCCCA 26104 || ||||||| ||||| | || |||| Sbjct 1473 AGATGGAAACTAAGCTCCCACTCACGACCCA 1503 >seq533404 Length=557 Score = 140 bits (154), Expect = 1e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||||||| |||||||| || || || ||||| ||||||||||||||||| || | || Sbjct 316 GCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 375 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||||| || ||||||||||| | || | || | |||||| || || Sbjct 376 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACCGAT 435 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || || || || || |||||||||||| || || | ||| || | | Sbjct 436 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 495 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAA 25674 || || | || ||||||||||| |||||||||| |||| Sbjct 496 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATTTAAA 537 >seq836247 Length=317 Score = 136 bits (150), Expect = 1e-27 Identities = 206/293 (70%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 25687 TTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTA 25746 || || |||||||| |||||||| | || ||||| || |||||||| || || || ||| Sbjct 295 TTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTA 236 Query 25747 TACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTT 25806 || || ||||||||||| | |||| | || || | || ||||| | | || ||| Sbjct 235 TAAGTTTCTTCTTCTTGACTGAATATGTAACCTTCATTAGCAGATTTATTTTCTGTGGTT 176 Query 25807 TCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCG 25866 || | || | || || || | | || ||||||||| |||| | || | Sbjct 175 TCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGTCA 116 Query 25867 AATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGA 25926 ||||| | || | ||||| || || || ||||||||||| ||||| || ||||| Sbjct 115 AATACAATAGTTACGCATAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGG 56 Query 25927 AAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGA 25979 || |||| ||| || |||||||| || |||| | ||||||||||||||||| Sbjct 55 AATACAATCATGAAGTTGAAAGTACCATAAATTCTTAGAGGCATACCATCAGA 3 >seq81374 Length=3119 Score = 125 bits (138), Expect = 2e-24 Identities = 125/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 25891 TGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTC 25950 || || |||||||||||||| |||||||| || || || |||| ||| || |||||||| Sbjct 508 TGCAATGGATGCATAAGGATGTTGTGTTCGGCTTGGAATACAATCATGAAGTTGAAAGTA 567 Query 25951 CCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAG 26010 || |||| | ||||||||||||| ||| || || ||||| |||| ||||||| |||| Sbjct 568 CCAAAAATTCATAGAGGCATACCATTAGAAAAGCTTCCTTGACCAATTGGGTAGATTAAG 627 Query 26011 AATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 26052 || ||| | || |||||| ||| | |||||| || ||| Sbjct 628 AAAACAATAGTCGCAACTGCAATAGGAGTTGAATATGCAACA 669 >seq59682 Length=3695 Score = 95.1 bits (104), Expect = 4e-15 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 26167 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTA 26226 ||||| || || | || ||| ||||||| |||||||| || || | ||| || || | Sbjct 582 AACCATTCATCAACGGATGCTACTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCA 523 Query 26227 GATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACA 26286 || | || | || | ||| || || ||||||||||| |||| | ||| || ||| Sbjct 522 GAAGTAGGAATAATGTCACCTCGAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACA 463 Query 26287 GGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCT 26346 | |||||||||| ||| ||||||| ||||| ||||||| || | || | |||| || Sbjct 462 GATTCACGAATACGATCAATATCCAATGGAGGAGCAGCAATGAAGTCGATAATAAATACT 403 Query 26347 GT 26348 || Sbjct 402 GT 401 >seq348021 Length=939 Score = 87.8 bits (96), Expect = 5e-13 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 25684 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 25743 || || || |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 937 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATA 878 Query 25744 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCA 25794 ||||| || ||||||||||| |||||| |||| || | || ||||||| Sbjct 877 TTATAAGTTTCTTCTTCTTGACCGAATCTATAACCTTCATTAGCAGATTCA 827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150412288034360