Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq48246 120 4e-22 seq119719 84.2 3e-11 >seq48246 Length=4099 Score = 120 bits (132), Expect = 4e-22 Identities = 305/460 (66%), Gaps = 7/460 (2%) Strand=Plus/Plus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 ||||| ||||||||||| ||||| || ||||||| || ||||| || || |||||| Sbjct 1574 AAACACGCAAAATCACAGTGTAATCCCTCATCTCGCGAGATTAATTCGTTCGAGAAGGTT 1633 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCAGAAAA 37291 ||||| ||||| || || | ||| || | |||||| || || ||| ||| ||| ||||| Sbjct 1634 AATCCAGGCATCAACCCACGTTTCTTCAACCAAAAAATCGC-GCAGAAGCTTCCGGAAAA 1692 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACT-ATAAT 37350 |||||| |||||||| || || || | || ||| | || || || | Sbjct 1693 GAAAATCCCTTCAACGCAAGCGAAAGCGATAATACGCTCTGCAAACGT----CTCCGAGC 1748 Query 37351 CAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTG 37410 || |||||||| | ||||| || || | |||||| ||| || || |||| Sbjct 1749 CATCGATCCATTTGAGAGCCCAATTCGCTTTCTTCTCAACACACGGAATAGTCTCGATTG 1808 Query 37411 CTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTAT 37470 || ||||| | |||| || | | || |||| || | || | || ||||| | Sbjct 1809 CTCGGAAGAGTCTGCTTTTCTCATTAGAGTCCTTTATGTAGGATTCCAGAAGCAAACTGT 1868 Query 37471 ACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAG 37530 |||| || ||||| ||||| || || || ||||| || || || || | || || | Sbjct 1869 ACATCTCGGAGTGGATATTCTCGATGGCAATCTGGAATCCGTAGAAGGCACGCGCCTCCG 1928 Query 37531 ATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAG 37590 | |||||| || || | || | |||| |||||| ||| || ||||| | Sbjct 1929 CAACTTGAACCTCTTTCATGAATCGTCCGGCTAGGTTTTCCAAAACGATGCCATCGGAGG 1988 Query 37591 CTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTC 37630 | || ||||| ||||| || | | ||||| || || || Sbjct 1989 CGGCGAAGAAGGCAAGGACGTGAGTGATAAAGTGCCTCTC 2028 >seq119719 Length=2442 Score = 84.2 bits (92), Expect = 3e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 37175 ACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAA 37234 ||| ||||| |||||||||| ||| || |||||| ||| | || ||| || || || || Sbjct 195 ACAAGCAAAGTCACAATGTAGACCCTCGTCTCTAGATATAAGTTTATTTGAGAAAGTCAA 136 Query 37235 TCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAA-AAGA 37293 ||||||||||| || || || || | ||||||||||| ||||| | || || ||| Sbjct 135 CCCTGGCATTAATCCCCTCTTCTTTAACCAAAATATTG-AACAAAAACTACAAAATAAGG 77 Query 37294 AAATA 37298 ||||| Sbjct 76 AAATA 72 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 585830116604400