Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq227744 129 2e-25 seq342690 123 8e-24 >seq227744 Length=1455 Score = 129 bits (142), Expect = 2e-25 Identities = 230/336 (68%), Gaps = 11/336 (3%) Strand=Plus/Minus Query 25942 TTGCCGATCATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCA 26001 || || | ||| ||||| || || |||| || || | |||||| || ||||| || ||| Sbjct 451 TTACCTAACATTTGCATTGTACCACCAATATTTACAATAATTTCTGTAGTGTAACGTTCA 392 Query 26002 ACGCCGTCCTTTTCCCACTTGCGGGTTTTCAGTTGC-------CCCTCAATGTAAACCTG 26054 | |||| ||| ||||| ||| |||| || ||||| || || || Sbjct 391 A----GTCCATTTTGATCTTGCCATTTTCTAGTTTGTAACGATCCTTCAATATATACTTG 336 Query 26055 TGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCG 26114 |||||||| || || ||||| || || || |||| || ||||| | || | || Sbjct 335 AGAACCTTTTCGAAGATATTCGCCAGCAATTTCTGCTAATTTTCCAAATAAAACTATTCG 276 Query 26115 ATGCCATTCTGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGT 26174 |||||||||||| |||||| ||||| || || | ||||| ||||| ||||||| || Sbjct 275 ATGCCATTCTGTTTTTTCTTTATTTTCCCCAGTGTTTTTATCTTTCCAATTTTCTGAAGT 216 Query 26175 CGCTACGGTAATGTTGGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGTT 26234 |||| || || || | ||||| ||||| ||||| ||||| | || ||||| | Sbjct 215 AGCTAATGTCATATTTACTACTGCATTACCATTTGGCATATAACGAACTTCAGGATCTTG 156 Query 26235 CCCCAGGTTACCGACAAGGATTACTTTATTTACGCC 26270 ||| | | || | ||| || ||||||||||| || Sbjct 155 CCCTAAATGCCCAATAAGAATAACTTTATTTACACC 120 >seq342690 Length=956 Score = 123 bits (136), Expect = 8e-24 Identities = 222/324 (69%), Gaps = 3/324 (1%) Strand=Plus/Plus Query 25950 CATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTC 26009 ||| ||||| || || |||| || || |||||||| || || || || || | || | Sbjct 591 CATTTGCATAGTCCCACCAATATTTACAACAATTTCTGTAGTATAACGTTCTAAACCATT 650 Query 26010 CTTTTC---CCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTT 26066 | || ||| || | |||| ||| || ||||| || || || |||||||| Sbjct 651 TTGGTCTTGCCATTTTCTAGTTTGTAGTGATCCTTCAATATATACTTGAGAACCTTTTCG 710 Query 26067 CAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTCTGT 26126 || || || || || || || |||| || ||||| | || | | |||||||||||| Sbjct 711 AAGATATTCACCGGCAATTTCTGCTAATTTTCCAAATAATACTATTCTATGCCATTCTGT 770 Query 26127 CACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAAT 26186 |||||| ||||| || || | ||||| ||||| ||||||| || |||| || || Sbjct 771 TTTTTCTTTATTTTCTCCAGTATTTTTATCTTTCCAATTTTCTGAAGTTGCTAAAGTCAT 830 Query 26187 GTTGGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGTTCCCCAGGTTACC 26246 || | ||||| ||||| ||||| ||||| | |||||||| | || | | || Sbjct 831 ATTTACTACTGCATTACCATTGGGCATATAACGTACTTCTGGATCTTGTCCTAAATGTCC 890 Query 26247 GACAAGGATTACTTTATTTACGCC 26270 | ||| || |||||||| ||||| Sbjct 891 AATAAGAATAACTTTATTAACGCC 914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158154888654260