Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_018087.3 Length=166687 Score E Sequences producing significant alignments: (Bits) Value seq30067 123 3e-23 seq159469 98.7 1e-15 >seq30067 Length=5021 Score = 123 bits (136), Expect = 3e-23 Identities = 525/821 (64%), Gaps = 30/821 (4%) Strand=Plus/Minus Query 141801 CATTAAATTGTTTAATTGAATACCATAATCCATATGACGAATACGGTTTTCTTCAATGCC 141860 ||| || || || | |||||| |||| || | |||||| | | ||||||||||| || Sbjct 3727 CATGAATTTATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCC 3668 Query 141861 CTTATTGTTCTTAAGAACCATAAGGTTTTCACATTCTAAATGCCAAATAGGCCAGTACGC 141920 | | ||||| || | ||| | | |||||| ||| |||||||| || || | | Sbjct 3667 CCTGTTGTTTTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAAT 3608 Query 141921 AGTAGCAGAACCTTTACGAATACCACCTTGAGAACATGAATGGACCGCTGCATTTTTAA- 141979 ||| |||| || | || ||| ||||||||||| || | || || || || || Sbjct 3607 AGTTGCAGCTCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGC-GCTTTGAAAAT 3549 Query 141980 GTTTCCAAAATGGTGTTACACCAGTGTGTTTAACTTCACCTGGACCAATTTTAGACCCTT 142039 |||| |||| ||| | |||||| || |||| || | ||| | ||| Sbjct 3548 GTTTATAAAAAGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTA 3489 Query 142040 CGGCACGGATTGCACCACCGCCGATACCAATACCAGCACGTTTAGAAACATATTTTACAA 142099 || || ||| || | |||||||| |||||||||| ||||||||||| |||| Sbjct 3488 ATGCGCGAATTTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAA 3429 Query 142100 TAGCTGATGTACTTTCAGTAATTGAATCTAGGCTATCGCCGGTTTCAATTAAAACACATG 142159 ||| || | || |||| |||| || |||| | ||||||||||||||| | Sbjct 3428 TAGAGCTAGTTGTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAG 3369 Query 142160 AACTAAATTGACGAGTTGGGGTACGAACACCGGCAAGAATAGGAGTAGGTAAACTAACTT 142219 |||||||||||||||| || || | || || | | ||| || || ||||| || Sbjct 3368 AACTAAATTGACGAGTAGGAGTTCTGACTCCAGACATAATTGGTGTTGGTAATGAAA--- 3312 Query 142220 GTTTTAA----TGATGTTGCATCATAAAAATCTTTTACGTATTGAATACGTTTATCTAAA 142275 |||||| || | |||| |||||| | | || | || || || | Sbjct 3311 -TTTTAAAAGTAGAAATAGCATTGTAAAAACGATGAATATAATTTATTCGAATACTTTTT 3253 Query 142276 GGCTCATCTTG---ATGTAAACACATACCAATGAGTATAAACATAAATTGTGGTGTTTCA 142332 || || ||| | |||||| | || | ||| ||| |||||| | ||||| Sbjct 3252 GG---ATATTGAGAAAATAAACATGCAGATATTAAAATATACAAAAATTGCGCACTTTCA 3196 Query 142333 TAAATTTTACCAGAAGATCGATCTTTTACAAGATACTTATCTT-TAACTTGCATCGCACC 142391 || ||||| || | |||| | || | ||| || ||| |||| || | | | Sbjct 3195 TATATTTTTCCGCTAACACGATTCTGTATTAAATATTTTGCTTCTAAC-TGTTTTACTGC 3137 Query 142392 TGCATATGTAAAATTAAAATCACGGTCATGATCGATAATTGAATTTAAACTATCATAGTC 142451 |||||||| |||||| | ||| || ||||| |||| ||||| | | | || Sbjct 3136 TGCATATGAAAAATTCATATCTCGACAATGATTAATAAAAGAATTCATTTGTAAAAATTC 3077 Query 142452 TGCTTTAGACCACTTTGTTAAAAGTTCTTTATCATATACACCCTGTTCTA----CACCA- 142506 | | ||| | ||| |||| | | || ||||||| | | ||| |||| Sbjct 3076 GTCATAAGAATAGTTTTTTAATAAATTTTCATCATAT------TTTCCTAAAAGAACCAT 3023 Query 142507 -GATTTAACATGATCATATAAATGGGGTGGATCAAATTGACCAAATACTTCTTTACGAAG 142565 ||| ||||||||||||| || ||||| |||||||||||| || | | ||| | || Sbjct 3022 TTTTTTTACATGATCATATAGTTGAGGTGGTTCAAATTGACCATATGCCTTTTTTCTTAG 2963 Query 142566 ACCAAACATTGCTAGATTTGATGCGACATATTGATAATCTG 142606 ||| || |||| ||| || | ||||||||| |||| Sbjct 2962 GTGAAAAATCGCTAATCTTGCCGCCATATATTGATAGTCTG 2922 >seq159469 Length=1977 Score = 98.7 bits (108), Expect = 1e-15 Identities = 271/414 (65%), Gaps = 6/414 (1%) Strand=Plus/Plus Query 141801 CATTAAATTGTTTAATTGAATACCATAATCCATATGACGAATACGGTTTTCTTCAATGCC 141860 |||||| || || | ||||| | ||||| |||||||| | | ||||||||||| || Sbjct 1282 CATTAATTTATTAATTTGAAGTGCGTAATCAATATGACGCACTCTATTTTCTTCAATTCC 1341 Query 141861 CTTATTGTTCTTAAGAACCATAAGGTTTTCACATTCTAAATGCCAAATAGGCCAGTACGC 141920 |||| || || | ||| | | ||||| ||| |||||||| || || | | Sbjct 1342 TCTATTATTTTTTAAAACTAATAAACTTTCAACTTCAAAATGCCATATTGGATAAAAAAT 1401 Query 141921 AGTAGCAGAACCTTTACGAATACCACCTTGAGAACATGAATGGACCGCTGCATTTTTAA- 141979 ||| |||| ||| | | || ||||| ||||| || | || || | ||| || Sbjct 1402 AGTTGCAGCTCCTCCTCTCACTCCGCCTTGTGAACAGGATTTTACGGC---ACTTTGAAA 1458 Query 141980 --GTTTCCAAAATGGTGTTACACCAGTGTGTTTAACTTCACCTGGACCAATTTTAGACCC 142037 |||| |||| ||| | |||||| || ||||||| | ||| | || Sbjct 1459 GTGTTTATAAAAAGGTATACAACCAGTATGAAATGCTTCACCGTTTCTAATAGGACTTCC 1518 Query 142038 TTCGGCACGGATTGCACCACCGCCGATACCAATACCAGCACGTTTAGAAACATATTTTAC 142097 | || || ||| || | ||||| || |||||||||| || |||||||| || Sbjct 1519 TAACGCGCGAATTTGTCCCGCATTAATACCGATTCCAGCACGTTGTGATACATATTTAAC 1578 Query 142098 AATAGCTGATGTACTTTCAGTAATTGAATCTAGGCTATCGCCGGTTTCAATTAAAACACA 142157 ||||| ||| | || |||| || | || |||| | ||| ||||||||||| Sbjct 1579 AATAGAGCTAGTAGTAGCATTAATAGAGTTTAAATTATCAGCACATTCGATTAAAACACA 1638 Query 142158 TGAACTAAATTGACGAGTTGGGGTACGAACACCGGCAAGAATAGGAGTAGGTAA 142211 |||||||| |||||||| || || || || || | | ||| || || ||||| Sbjct 1639 AGAACTAAACTGACGAGTAGGAGTTCGTACTCCAGACATAATGGGTGTTGGTAA 1692 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 140766 TTCAATACCATTTGTTGAATTGGATACTTGAGAAGATGATTCACAAGGCATTTGGGCAGA 140825 |||||||||||| |||| ||| |||| ||||||||||| ||| |||||||| ||||| Sbjct 403 TTCAATACCATTGGTTGCATTAGATATTTGAGAAGATGTTTCTGAAGGCATTAAAGCAGA 462 Query 140826 TAACGTTACATTACGCATACCAAATTCTTTAAGATCAATTCGTAAT 140871 ||| ||| ||| | || ||| ||| ||||| | | |||| ||| Sbjct 463 TAATGTTGAATTTCTCAACCCATATTTTTTAATTTTATTTCGCAAT 508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 527430355873200