Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_018855.1 Length=169158 Score E Sequences producing significant alignments: (Bits) Value seq159469 197 1e-45 seq30067 188 8e-43 seq118173 86.0 7e-12 >seq159469 Length=1977 Score = 197 bits (218), Expect = 1e-45 Identities = 525/792 (66%), Gaps = 15/792 (2%) Strand=Plus/Minus Query 131895 TGAAACATATTATTCGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCTACTC 131954 |||| |||||| ||||||||| |||| |||||||| | || ||||||| || || | Sbjct 1742 TGAATTATATTAAGCGTTTTTATAATGCAATTTCTACTTTTAAAATTTCATTACCAACAC 1683 Query 131955 CAATTATGGCAGGTGCTCGTACTCCAACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAG 132014 | |||||| | || | || ||||| ||||| ||||| | |||||| | || ||| Sbjct 1682 CCATTATGTCTGGAGTACGAACTCCTACTCGTCAGTTTAGTTCTTGTGTTTTAATCGAAT 1623 Query 132015 CCGGTGATTCGTTAAAATCTATTAACAAAACTTC-AGCATCAATTATTGAATATATTTCT 132073 | |||| ||||| |||||||| ||| | ||| || ||| || ||||| | || Sbjct 1622 GTGCTGATAATTTAAACTCTATTAATGCTACTACTAGC-TCTATTGTTAAATATGTATCA 1564 Query 132074 AAACGAGCTGGTATAGGTATCAACGTTGGTATGCTTCGTGC---AGAAGGTTCTAAGATC 132130 |||| ||||| || ||||| || | || |||| || || | || ||| | Sbjct 1563 CAACGTGCTGGAATCGGTATTAATGCGGGACAAATTCGCGCGTTAGGAAGTCCTATTA-- 1506 Query 132131 GGTATGGGTGAAGTTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCA 132190 | | ||||||| ||||| ||| ||| || || | ||||| || |||| ||| Sbjct 1505 -GAAACGGTGAAGCATTTCATACTGGTTGTATACCTTTTTATAAACACTTTCAAAGTGCC 1447 Query 132191 GTAAAATCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATG 132250 |||||||| ||||| ||||| || | | || || ||||| || | |||||| || Sbjct 1446 GTAAAATCCTGTTCACAAGGCGGAGTGAGAGGAGGAGCTGCAACTATTTTTTATCCAATA 1387 Query 132251 TGGCACTTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAAC 132310 ||||| || ||||| || | |||||||| | |||||||| | ||| | || ||||| Sbjct 1386 TGGCATTTTGAAGTTGAAAGTTTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAAT 1327 Query 132311 CGTATTCGACATATGGACTACGGAATTCAAATTAATGACCTTATGATGGAACGCCTTGGT 132370 | | || ||||| || |||| | ||||||||||| | | ||| || | | || Sbjct 1326 AGAGTGCGTCATATTGATTACGCACTTCAAATTAATAAATTAATGTATCAAAGAAT--GT 1269 Query 132371 AAAAATGA-TTAT-ATTACTTTATTTAGCCCTCACGAAATGTCAGGCGAACTATACTACT 132428 | | || ||| || || |||||||| ||| | |||| ||||||||| | Sbjct 1268 TATCAGGAGATATAATAACATTATTTAGTCCTTCTG--ATGT-TCCTGAACTATACGAAG 1212 Query 132429 CGTTCTTTGAAGATCAAGATAAATTCCGTGAGCTTTATGAGAAAGCTGAAAAAGACCCGA 132488 || ||| ||||||| | ||||| || | ||| || ||||||||| | Sbjct 1211 TATTTTTTTCAGATCAAAAAAAATTTGAAGAAATGTATATTCAATATGAAAAAGATAAAA 1152 Query 132489 CAATCAGAAAGAAAAGAATTAAAGCACTAGAACTCTTTGAATTGTTCATGACTGAACGTT 132548 || ||||| |||||||||||||||||||| || ||| ||| | ||| ||| | Sbjct 1151 ATATAAGAAAAAAAAGAATTAAAGCACTAGATCTTTTTTCATTAATGATGCAAGAAAGAA 1092 Query 132549 CTGGTACTGCTCGAATTTATCCACAGTTTGTTGATAACACGAATAACTACACTCCATTTA 132608 || |||| || |||||| ||| ||| ||| | ||| | | | |||||| Sbjct 1091 CTTCCACTGGACGTATTTATATACAAAATGTAGATCATTGTAATTCACATAGTTCATTTA 1032 Query 132609 TTCGTGAAAAAGCTCCAATTCGTCAGAGTAACTTATGTTGTGAAATCGCTATTCCAACTA 132668 || || | | ||||||| | || ||| ||||||| ||||| | | || |||| Sbjct 1031 ATCCTGCATTATCTCCAATAAGACAATCTAATTTATGTTTAGAAATTACATTACCCACTA 972 Query 132669 ATGATGTGAATG 132680 | | | | |||| Sbjct 971 AAGCTTTAAATG 960 >seq30067 Length=5021 Score = 188 bits (208), Expect = 8e-43 Identities = 313/449 (70%), Gaps = 6/449 (1%) Strand=Plus/Plus Query 131901 ATATTATTCGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCTACTCCAATTA 131960 ||||| ||||||||| |||| |||||||| | || ||||||| || || ||||||| Sbjct 3273 ATATTCATCGTTTTTACAATGCTATTTCTACTTTTAAAATTTCATTACCAACACCAATTA 3332 Query 131961 TGGCAGGTGCTCGTACTCCAACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTG 132020 || | || | | ||||| ||||| || || | |||||| | |||||| | || Sbjct 3333 TGTCTGGAGTCAGAACTCCTACTCGTCAATTTAGTTCTTGTGTTTTAATTGAATGTGCTG 3392 Query 132021 ATTCGTTAAAATCTATTAAC---AAAACTTCAGCATCAATTATTGAATATATTTCTAAAC 132077 || ||||| || ||||| | |||| ||| || ||| || ||||| |||| ||| Sbjct 3393 ATAATTTAAATTCCATTAATGCGACAACT--AGC-TCTATTGTTAAATATGTTTCCCAAC 3449 Query 132078 GAGCTGGTATAGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGG 132137 | ||||| || ||||| || | || |||| ||| ||| | || | | | Sbjct 3450 GTGCTGGAATTGGTATTAATGCAGGACAAATTCGCGCATTAGGAAGTCCTATTAGAAACG 3509 Query 132138 GTGAAGTTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAAT 132197 | |||| ||||| ||| ||| || || | |||||||| |||| || ||||||| Sbjct 3510 GAGAAGCATTTCATACTGGTTGTATACCTTTTTATAAACATTTTCAAAGCGCTGTAAAAT 3569 Query 132198 CTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACT 132257 ||||||||||||| ||| || | ||||| ||||| || | |||||| || ||||| | Sbjct 3570 CTTGTTCTCAAGGAGGTGTTAGAGGTGGAGCTGCAACTATTTTTTATCCAATATGGCATT 3629 Query 132258 TAGAAGTAGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTC 132317 | ||||| || || |||||||| | ||||| |||| || | || ||||| | | | Sbjct 3630 TTGAAGTTGAAAATTTATTAGTTTTAAAAAACAACAGGGGAATTGAAGAAAATAGAGTAC 3689 Query 132318 GACATATGGACTACGGAATTCAAATTAAT 132346 | ||| | ||||| | ||||||||||||| Sbjct 3690 GTCATGTCGACTATGCAATTCAAATTAAT 3718 >seq118173 Length=2464 Score = 86.0 bits (94), Expect = 7e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 133879 AATCTTAAGTATCAATCATTATTAGATTCTATCCAAGGCAGGGCCCCATCTGCGGTACTT 133938 ||| | || |||||| ||||| | |||||||| ||||| || ||| | | || Sbjct 2193 AATTTAAAATATCAAACATTACTTGATTCTATTCAAGGAAGAAGCCCTAATATAGCTTTT 2134 Query 133939 ATGGCACTGATTTCCGACCCTTCATTAGATACATGGGTTGCAACATGGACATTCAGTGAA 133998 | || | ||||| ||| | |||| |||||||||| ||||||| | || ||| Sbjct 2133 TTACCAATCATTTCTATTCCTGAACTAGAGACATGGGTTGAAACATGGTCTTTTTCAGAA 2074 Query 133999 ACTATTCACTCTCGTTCGTATACTCATATTATGCGAAATCTTTATACAGAC-CCATCTAA 134057 ||||| || |||||||| ||||||||||| || |||| | || | | | |||||| Sbjct 2073 ACTATACATTCTCGTTCTTATACTCATATAATTAGAAA-CATTGTCAACTCTCCATCTGT 2015 Query 134058 GGTATTTGATGAAATT 134073 ||||||||||| ||| Sbjct 2014 AGTATTTGATGATATT 1999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535250961160800