Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq27206 127 2e-24 seq40887 120 2e-22 seq75854 105 5e-18 seq90319 104 2e-17 seq48514 104 2e-17 seq102355 100 2e-16 seq161151 95.1 9e-15 seq90807 89.7 4e-13 >seq27206 Length=5223 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || |||| || | ||| || ||| ||| ||||||||||||||||||| Sbjct 2603 CCACCTCTAAGACGCAGAACAAGATGCAGAGTGGACTCCTTTTGAATATTGTAATCAGCC 2662 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || | || || | ||||||||| |||||||| || | ||||||||| | ||| Sbjct 2663 AAAGTCCGCCCATCTTCAAGCTGCTTACCAGCAAATATAAGCCTCTGTTGATCAGGCGGA 2722 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||||| || ||| | | | | || || ||| ||| Sbjct 2723 ATACCCTCCTTGTCCTGAATCTTTGCCTTGACATTATCAATCGTATCCGAGCTCTCAACC 2782 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | || ||||| || || ||||| || || ||||||||||||||| Sbjct 2783 TCTAGAGTGATCGTCTTCCCTGTCAATGTCTTGACAAAAATCTGCATC 2830 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || |||||||| || ||||||| || | ||| | | || ||||||||||| |||||||| Sbjct 2867 TCCTTTTGAATGTTATAATCAGCTAAAGTTCTACCATCTTCCAACTGCTTCCCGGCAAAG 2926 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||| ||||||||||||| |||| || || ||||| |||||| || ||| Sbjct 2927 ATCAGACGCTGTTGATCCGGTGGAATCCCTTCTTTGTCTTGAATCTTAGCCTTGACATTG 2986 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || || ||||| | || || ||||| || || || || || || Sbjct 2987 TCGATCGTATCAGAACTTTCAACCTCTAGAGTGATTGTTTTCCCGGTTAACGTCTTGACG 3046 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 3047 AAGATCTGCAT 3057 >seq40887 Length=4418 Score = 120 bits (132), Expect = 2e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||| | |||||||| | || ||| || |||||||| ||||||| || | ||| Sbjct 3202 AGCCGGAGAACCAAATGCAAAGTCGACTCCTTCTGAATATTATAATCAGCAAGCGTACGA 3143 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || ||||| |||| ||||| ||||||| || | || ||| Sbjct 3142 CCATCCTCCAACTGCTTCCCTGCAAAGATCAACCGCTGCTGATCCGGTGGGATTCCTTCC 3083 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| ||| ||| | | | | || || ||| ||||||| ||| Sbjct 3082 TTATCCTGAATCTTCGCTTTCACATTATCAATCGTGTCAGAGCTCTCAACCTCCAATGTA 3023 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| ||||| ||||| || || ||||| ||||||||| Sbjct 3022 ATCGTCTTTCCAGTCAACGTCTTCACAAATATCTGCATC 2984 >seq75854 Length=3247 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || ||||| || | || | ||| ||| ||||||||||||||||||| Sbjct 2113 CCACCTCTAAGACGCAAGACAAGGTGCAAAGTGGACTCCTTTTGAATATTGTAATCAGCC 2172 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | | | || || | |||||| || |||||||| || | ||| ||||| | ||| Sbjct 2173 AAAGTCCTCCCATCTTCAAGCTGCTTCCCAGCAAATATAAGCCTCTGCTGATCAGGTGGA 2232 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||| || ||||||| || ||| | | | | || || ||| ||| Sbjct 2233 ATACCCTCCTTATCCTGAATCTTTGCCTTCACATTATCAATGGTGTCCGAGCTCTCAACC 2292 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | || ||||| || || ||||| || || ||||||||||||||| Sbjct 2293 TCTAGAGTGATCGTCTTCCCTGTCAATGTCTTGACAAAAATCTGCATC 2340 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | || ||| |||| ||| | || || ||||| || || ||||| | | Sbjct 2341 CCTCCCCTCAACCTCAAAACCAGATGCAAAGTCGATTCCTTTTGGATGTTATAATCGGCT 2400 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | ||| | | || ||||||||||| || ||||| ||||| ||||||||||||| ||| Sbjct 2401 AAAGTTCTACCATCCTCCAACTGCTTTCCAGCAAAGATCAGACGCTGTTGATCCGGTGGA 2460 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || ||||| ||||| || ||| | | | || || || ||| Sbjct 2461 ATCCCTTCTTTGTCCTGTATCTTAGCCTTCACATTGTCGATCGTATCAGAACTTTCAACC 2520 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || |||||||| || || || || || || |||||||| Sbjct 2521 TCCAATGTGATTGTTTTTCCAGTTAACGTCTTAACGAAGATCTGCAT 2567 >seq90319 Length=2932 Score = 104 bits (114), Expect = 2e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || ||||| ||||| | | | | || | || |||| |||||| ||||| || Sbjct 750 CTCCTTCTGGATATTATAATCCGCCAAAGTCCGCCCATCCTCCAGCTGCTTTCCGGCGAA 809 Query 48635 TATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAG 48693 |||| |||||||| |||| ||||| | ||||||||||| |||||| || ||| Sbjct 810 GATCAACCGCTGTTGGTCCGGTGGGATC-CCCTCCTTGTCCTGAATCTTCGCCTTCACAT 868 Query 48694 AACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTA 48753 | | | | || || ||||||||||| |||||||| || || ||||| || || | Sbjct 869 TATCAATCGTGTCAGAACTCTCCACCTCCAAAGTAATCGTCTTCCCTGTCAATGTCTTCA 928 Query 48754 CAAAAATCTGCATC 48767 | |||||||||||| Sbjct 929 CGAAAATCTGCATC 942 >seq48514 Length=4088 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || |||||||| |||||||||| | | ||| || || || | |||||| || |||||| Sbjct 2750 TCCTTTTGAATGTTGTAATCAGCCAAAGTTCTCTCATCTTCAAGCTGCTTCCCAGCAAAT 2809 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || | ||||||||| | |||| |||||||| || ||||||| || ||| | Sbjct 2810 ATAAGCCTCTGTTGATCAGGCGGAATCCCCTCCTTATCCTGAATCTTTGCCTTCACATTA 2869 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||| ||||| | || |||| || || ||||| || || ||| Sbjct 2870 TCAATGGTGTCCGAGCTCTCTACCTCTAAAGTGGTCGTCTTCCCTGTCAATGTCTTCACA 2929 Query 48756 AAAATCTGCATC 48767 |||||||||||| Sbjct 2930 AAAATCTGCATC 2941 >seq102355 Length=2708 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| ||||| |||||||| ||||||||||| | ||| | || |||| || | ||| Sbjct 832 ATGGAGCGTCGATTCTTTTTGGATATTGTAATCGGCGAGAGTACGGCCGTCTTCGAGCTG 773 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 |||||||| || || || || |||||||||| |||| || |||||||| ||||| Sbjct 772 TTTACCGGCGAAGATAAGACGTTGTTGATCCGGAGGAATTCCTTCCTTGTCCTGTATCTT 713 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 ||| ||| | | | || || ||| || || | || ||||| || ||||| Sbjct 712 CGTTTTAACATTGTCGATCGTATCGGAACTCTCGACTTCGAGAGTTATCGTCTTCCCCGT 653 Query 48743 CAAAGTTTTTACAAAAATCTGCATC 48767 | ||||| ||||||||||||||| Sbjct 652 TAGGGTTTTCACAAAAATCTGCATC 628 >seq161151 Length=1962 Score = 95.1 bits (104), Expect = 9e-15 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||| || | ||| ||| |||| || | |||||| ||||| || Sbjct 1307 CTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAA 1366 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || || ||||| || | || | |||||||||||| |||||| ||| ||| Sbjct 1367 GATGAGACGTTGTTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTTTGCTTTCACATT 1426 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || | ||| ||||||| ||| ||||| || ||||| | ||||| || Sbjct 1427 GTCGATCGTGTCAGAGGACTCTACCTCCAACGTGATCGTCTTACCCGTTAGGGTTTTCAC 1486 Query 48755 AAAAATCTGCATCGT 48769 || ||||||||||| Sbjct 1487 GAAGATCTGCATCGT 1501 >seq90807 Length=2923 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| || || || ||||| || | || ||| | |||| || Sbjct 1389 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCTACCGTCTTCA 1330 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| ||||| || || ||||||||||| |||| |||| ||| |||||||| Sbjct 1329 AGCTGCTTTCCGGCGAAGATGAGTCGCTGTTGGTCCGGTGGAATGCCTTCCTTGTCCTGG 1270 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | || ||||||| || ||||| || Sbjct 1269 ATCTTCGCCTTCACATTGTCGATCGTGTCGGAGGATTCAACCTCCAAGGTGATCGTCTTA 1210 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| | ||||| || || |||||||| Sbjct 1209 CCCGTTAGGGTTTTCACGAAGATCTGCAT 1181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 376870104253530