Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_019398.1 Length=178193 Score E Sequences producing significant alignments: (Bits) Value seq159469 185 1e-41 seq30067 158 1e-33 seq408088 84.2 2e-11 >seq159469 Length=1977 Score = 185 bits (204), Expect = 1e-41 Identities = 309/447 (69%), Gaps = 0/447 (0%) Strand=Plus/Minus Query 40684 TTCTATAACGCAATTTCGGATCGTAAACTGTCATTACCTACGCCTATTATGGCGGGTGTG 40743 || ||||| |||||||| | |||| | |||||||| || || |||||| | || || Sbjct 1725 TTTTATAATGCAATTTCTACTTTTAAAATTTCATTACCAACACCCATTATGTCTGGAGTA 1666 Query 40744 CGTACTCCTACGCGTCAGTTCTCCAGTTGTGTTGTAATCGAATCGGGTGATTCTCTGGGT 40803 || |||||||| |||||||| ||||||| ||||||||| | |||| | | Sbjct 1665 CGAACTCCTACTCGTCAGTTTAGTTCTTGTGTTTTAATCGAATGTGCTGATAATTTAAAC 1606 Query 40804 TCTCTGAACGCTGTTACGTCCGCGATCGTGAAGTATATCTCTCAACGTGCTGGTATTGGT 40863 ||| | || ||| ||| | | || || || ||| | || ||||||||||| || ||| Sbjct 1605 TCTATTAATGCTACTACTAGCTCTATTGTTAAATATGTATCACAACGTGCTGGAATCGGT 1546 Query 40864 GTCAACGCCGGACACATTCGCGCTATGGGTTCAAAAATCCGTGGTGGTGAAGCAGTACAT 40923 | || || ||||| |||||||| | || || | ||||||||| | ||| Sbjct 1545 ATTAATGCGGGACAAATTCGCGCGTTAGGAAGTCCTATTAGAAACGGTGAAGCATTTCAT 1486 Query 40924 ACAGGCGTTATCCCGTTCTGGAAACACATTCAGACGGCGGTTAAATCCTGTTCCCAGGGC 40983 || || ||| || || | |||||| |||| | || || ||||||||||| || ||| Sbjct 1485 ACTGGTTGTATACCTTTTTATAAACACTTTCAAAGTGCCGTAAAATCCTGTTCACAAGGC 1426 Query 40984 GGTGTTCGTGGTGGTGCAGCAACCCTGTATTATCCGATCTGGCATCTTGAAGTTGAAAAC 41043 || || | || || || ||||| | | |||||| || |||||| |||||||||||| Sbjct 1425 GGAGTGAGAGGAGGAGCTGCAACTATTTTTTATCCAATATGGCATTTTGAAGTTGAAAGT 1366 Query 41044 CTGTTGGTTCTGAAAAATAACCGTGGCGTTGAAGAAAACCGTATTCGTCACCTGGATTAT 41103 | || ||| | |||||||| | || |||||||||| | | ||||| | ||||| Sbjct 1365 TTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAATAGAGTGCGTCATATTGATTAC 1306 Query 41104 GGCGTACAGCTTAACGATTTGATGTAT 41130 | | || |||| | || |||||| Sbjct 1305 GCACTTCAAATTAATAAATTAATGTAT 1279 >seq30067 Length=5021 Score = 158 bits (174), Expect = 1e-33 Identities = 303/447 (68%), Gaps = 0/447 (0%) Strand=Plus/Plus Query 40684 TTCTATAACGCAATTTCGGATCGTAAACTGTCATTACCTACGCCTATTATGGCGGGTGTG 40743 || || || || ||||| | |||| | |||||||| || || |||||| | || || Sbjct 3284 TTTTACAATGCTATTTCTACTTTTAAAATTTCATTACCAACACCAATTATGTCTGGAGTC 3343 Query 40744 CGTACTCCTACGCGTCAGTTCTCCAGTTGTGTTGTAATCGAATCGGGTGATTCTCTGGGT 40803 | |||||||| ||||| || ||||||| |||| |||| | |||| | | | Sbjct 3344 AGAACTCCTACTCGTCAATTTAGTTCTTGTGTTTTAATTGAATGTGCTGATAATTTAAAT 3403 Query 40804 TCTCTGAACGCTGTTACGTCCGCGATCGTGAAGTATATCTCTCAACGTGCTGGTATTGGT 40863 || | || || || | | || || || ||| | || ||||||||||| |||||| Sbjct 3404 TCCATTAATGCGACAACTAGCTCTATTGTTAAATATGTTTCCCAACGTGCTGGAATTGGT 3463 Query 40864 GTCAACGCCGGACACATTCGCGCTATGGGTTCAAAAATCCGTGGTGGTGAAGCAGTACAT 40923 | || || ||||| |||||||| | || || | || |||||| | ||| Sbjct 3464 ATTAATGCAGGACAAATTCGCGCATTAGGAAGTCCTATTAGAAACGGAGAAGCATTTCAT 3523 Query 40924 ACAGGCGTTATCCCGTTCTGGAAACACATTCAGACGGCGGTTAAATCCTGTTCCCAGGGC 40983 || || ||| || || | ||||| |||| | || || ||||| ||||| || || Sbjct 3524 ACTGGTTGTATACCTTTTTATAAACATTTTCAAAGCGCTGTAAAATCTTGTTCTCAAGGA 3583 Query 40984 GGTGTTCGTGGTGGTGCAGCAACCCTGTATTATCCGATCTGGCATCTTGAAGTTGAAAAC 41043 |||||| | ||||| || ||||| | | |||||| || |||||| ||||||||||||| Sbjct 3584 GGTGTTAGAGGTGGAGCTGCAACTATTTTTTATCCAATATGGCATTTTGAAGTTGAAAAT 3643 Query 41044 CTGTTGGTTCTGAAAAATAACCGTGGCGTTGAAGAAAACCGTATTCGTCACCTGGATTAT 41103 | || ||| | ||||| ||| | || |||||||||| | | ||||| | || ||| Sbjct 3644 TTATTAGTTTTAAAAAACAACAGGGGAATTGAAGAAAATAGAGTACGTCATGTCGACTAT 3703 Query 41104 GGCGTACAGCTTAACGATTTGATGTAT 41130 | | || |||| | || |||||| Sbjct 3704 GCAATTCAAATTAATAAATTCATGTAT 3730 >seq408088 Length=780 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/87 (83%), Gaps = 4/87 (5%) Strand=Plus/Plus Query 49471 AAAAATTCCGGCCCTTTAGCTTAATTGGTTAGAGCGGGTGACTCATAATCGCGCGGTTGC 49530 |||||| |||||||||||| | | ||| ||||| || ||||||||||||| ||| || Sbjct 615 AAAAAT---GGCCCTTTAGCTCAGT-GGTAAGAGCAGGCGACTCATAATCGCTTGGTCGC 670 Query 49531 TGGTTCAAGTCCAGCAGGGGCCACCAA 49557 |||||||| ||||||| |||||| ||| Sbjct 671 TGGTTCAAATCCAGCAAGGGCCATCAA 697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563846335006800