Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_019399.1 Length=167396 Score E Sequences producing significant alignments: (Bits) Value seq159469 226 3e-54 seq30067 199 4e-46 seq118173 102 9e-17 >seq159469 Length=1977 Score = 226 bits (250), Expect = 3e-54 Identities = 321/450 (71%), Gaps = 6/450 (1%) Strand=Plus/Plus Query 138522 CATTAGGTCATTCAGTTGAACGCCATAATCCATATGACGGATACGGTTTTCTTCTACGCC 138581 ||||| | ||| | ||||| | ||||| |||||||| | | |||||||| | || Sbjct 1282 CATTAATTTATTAATTTGAAGTGCGTAATCAATATGACGCACTCTATTTTCTTCAATTCC 1341 Query 138582 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 138641 | | |||||||| ||||| | | | |||||||||| |||||||| || |||||| || Sbjct 1342 TCTATTATTTTTTAAAACTAATAAACTTTCAACTTCAAAATGCCATATTGGATAAAAAAT 1401 Query 138642 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAGCATGATTTAACTGCAGTCTGAAAATG 138701 ||| ||||| || || | | ||| || ||||| || ||||| || ||| | ||||| || Sbjct 1402 AGTTGCAGCTCCTCCTCTCACTCCGCCTTGTGAACAGGATTTTACGGCACTTTGAAAGTG 1461 Query 138702 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 138761 ||| ||||||| ||| ||||||||| | ||||||| | | ||| | ||| Sbjct 1462 TTTATAAAAAGGTATACAACCAGTATGAAATGCTTCACCGTTTCTAATAGGACTTCCTAA 1521 Query 138762 AGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAAT 138821 || ||||| || | |||||||| |||||||| |||| || | ||||| |||||| Sbjct 1522 CGCGCGAATTTGTCCCGCATTAATACCGATTCCAGCACGTTGTGATACATATTTAACAAT 1581 Query 138822 TGA---AGCGGAAGCCTTGTTGATAGACTTTAATGAATCACCTGCCTCAATAACAACACA 138878 || || | ||| || ||||| ||||| |||| | || || | |||||| Sbjct 1582 AGAGCTAGTAGTAGCATTA---ATAGAGTTTAAATTATCAGCACATTCGATTAAAACACA 1638 Query 138879 TGAACTAAACTGTCGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAAT 138938 ||||||||||| ||||| ||||| || |||| |||||| || |||||||||||||| Sbjct 1639 AGAACTAAACTGACGAGTAGGAGTTCGTACTCCAGACATAATGGGTGTTGGTAATGAAAT 1698 Query 138939 CTGTCGAGTAGATACTGCTTCATAAAAACG 138968 | |||||| | ||| | ||||||||| Sbjct 1699 TTTAAAAGTAGAAATTGCATTATAAAAACG 1728 >seq30067 Length=5021 Score = 199 bits (220), Expect = 4e-46 Identities = 309/439 (70%), Gaps = 2/439 (0%) Strand=Plus/Minus Query 138531 ATTCAGTTGAACGCCATAATCCATATGACGGATACGGTTTTCTTCTACGCCTTTGTTATT 138590 ||| | ||||| |||| || | |||||| | | |||||||| | || |||| || Sbjct 3718 ATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCTGTTGTT 3659 Query 138591 TTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGC 138650 ||| ||||| | | |||||||||||| |||||||| || |||||| || ||| ||||| Sbjct 3658 TTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGC 3599 Query 138651 GCCGCCACGAATTCCACCCTGTGAGCATGATTTAACTGCAGTCTGAAAATGTTTCCAAAA 138710 || || | || || || || || || ||||| || || | ||||||||||| |||| Sbjct 3598 TCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTTATAAAA 3539 Query 138711 AGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCAGCACGAAT 138770 ||| ||| ||||||||| | |||| || | | ||| | ||| || ||||| Sbjct 3538 AGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAATGCGCGAAT 3479 Query 138771 CATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTGAAGCGGA 138830 || | ||||||||||||||||| |||| || | ||||| |||||| || | Sbjct 3478 TTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAATAGAGCTAGT 3419 Query 138831 AGCCTTGTTGATAGACTTTAATGAATCACCTGCCTCAATAACAACACATGAACTAAACTG 138890 | | || || || ||||| |||| | ||||| | |||||| |||||||| || Sbjct 3418 TGTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGAACTAAATTG 3359 Query 138891 TCGAGTCGGAGTAC-GACAACCAGCCATAATAGGAGTTGGTAATGAAATCTGTCGAGTAG 138949 ||||| ||||| | ||| |||| |||||| || |||||||||||||| | ||||| Sbjct 3358 ACGAGTAGGAGTTCTGAC-TCCAGACATAATTGGTGTTGGTAATGAAATTTTAAAAGTAG 3300 Query 138950 ATACTGCTTCATAAAAACG 138968 | | || | |||||||| Sbjct 3299 AAATAGCATTGTAAAAACG 3281 >seq118173 Length=2464 Score = 102 bits (112), Expect = 9e-17 Identities = 313/473 (66%), Gaps = 22/473 (5%) Strand=Plus/Plus Query 136725 CCAATAACGAGT---TTTAATCAGAACATCATCATAATAACGTCCAATGGATTCAGCACG 136781 |||||||| ||| | | ||||| ||||||||||| ||| || |||||| Sbjct 1918 CCAATAACTAGTCAATGTTATCAGT---TCATCATAATAGATAGAAATATTTTTAGCACG 1974 Query 136782 TTTCATAATAGCTTCATCTAATACAATTTCATCAAATACCTTCGATGGATCAGTATA-AA 136840 | ||||| || || | | | ||| ||||||||||| |||||| ||| | || Sbjct 1975 ATCATTAATATGTTTATTTGAAATAATATCATCAAATACTACAGATGGAG-AGTTGACAA 2033 Query 136841 GATTTCGCATGATATGAGTATATGAACGACTGTGAATAGTTTCACTAAAAGTCCATGTAG 136900 |||| || ||||||||||| |||||| || |||||||| ||||| |||||| Sbjct 2034 TGTTTCTAATTATATGAGTATAAGAACGAGAATGTATAGTTTCTGAAAAAGACCATGTTT 2093 Query 136901 CAGCCCATGTATCAAGACTTGGGTCTGAAATTAATG--ACATAAG-TACAGCAGACGGCG 136957 || ||||||| || || || ||||| | || | | ||| || | || ||| Sbjct 2094 CAACCCATGTCTCTAGTTCAGGAATAGAAATGATTGGTAAAAAAGCTATATTAG--GGCT 2151 Query 136958 CACGACCCTGAATGCTATCTAAAAGTGATTGATACTTCAGGTTGTTAGTAAAAATATTTT 137017 | || ||||| ||| | | || |||||| || | || || ||||||||| || Sbjct 2152 T-CTTCCTTGAATAGAATCAAGTAATGTTTGATATTTTAAATTACTAATAAAAATATGTT 2210 Query 137018 GCTGGTACTGAGGAAGCTTATTAAACTGTGCAGCATCCATCATCA---AGTT-TACTTCT 137073 | | | ||| | || | ||| | | || |||| | || | || |||| Sbjct 2211 TTTCATTATTAGGTAAGTTTTGAAAATCTAT----TCTATCACGAGAGAGATCTATTTCT 2266 Query 137074 TCAGGACGCCAGAAAAATGATAATTGCTTTTCGGTTAAATCTTCAAAAACTTTATGACGT 137133 ||||| | ||| |||||||||||||| ||||| |||| | |||||||| |||| | Sbjct 2267 TCAGGTCTCCAAAAAAATGATAATTGTTTTTCAATTAATTGTTCAAAAATATTATATTTT 2326 Query 137134 TGAATATCATAACGCGCAATACCAAGACCTGAACCAAAAAACATAGGTTCTTT 137186 || |||||| | |||||| | | | |||||||||||||||||||| Sbjct 2327 TGTTGATCATACCTAGCAATATTTACAGGTTGCCCAAAAAACATAGGTTCTTT 2379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529674309393600