Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq118173 161 2e-34 seq21362 120 7e-22 seq493767 114 3e-20 seq159469 111 4e-19 seq243076 102 2e-16 seq240997 96.9 8e-15 seq30067 89.7 1e-12 seq841471 87.8 4e-12 >seq118173 Length=2464 Score = 161 bits (178), Expect = 2e-34 Identities = 413/613 (67%), Gaps = 17/613 (3%) Strand=Plus/Minus Query 227029 TTCTTCTGGACACCTGATGAGGTAGATTTATCTAAAGACCGAATAGATTTTAAATCACTT 227088 || || |||| |||||| || ||||| | ||| || ||||||||||| || |||| Sbjct 2283 TTTTTTTGGAGACCTGAAGAAATAGATCTCTCTCGTGATAGAATAGATTTTCAA-AACTT 2225 Query 227089 ACC-GATCACGAGAAGCACATATTTACTTCCAATCTAAAACGGCAAATTTTATTAGATTC 227147 ||| || | || || || || |||| | ||| ||||| |||| ||| | ||||| Sbjct 2224 ACCTAATAATGAAAAACATATTTTTATTAGTAATTTAAAATATCAAACATTACTTGATTC 2165 Query 227148 TGTTCAAGGTAGGGGTCCAAATTTAGTACTGTTGCCATATGCA--TCATTACCAGAACTT 227205 | ||||||| || | || ||| ||| | || ||| || || || | || ||||| Sbjct 2164 TATTCAAGGAAGAAGCCCTAATATAGCTTTTTTACCA-AT-CATTTCTATTCCTGAACTA 2107 Query 227206 GAAAATTTTATTGAAACATGGTCATTTTTTGAAGGTTCTATACATAGTAAATCATATACA 227265 || | | ||||||||||||| |||| ||| |||||||| | || ||||| Sbjct 2106 GAGACATGGGTTGAAACATGGTCTTTTTCAGAA---ACTATACATTCTCGTTCTTATACT 2050 Query 227266 CATATTATTCGAAATATATATCCAAAC-CCAAGTGAAGTTTTTGATACTATGTTGGATAT 227324 ||||| ||| |||| || | || | | ||| || ||| |||||| ||| | | Sbjct 2049 CATATAATTAGAAACAT-TGTCAACTCTCCATCTGTAGTATTTGATGATATTATTTCAAA 1991 Query 227325 TCCAGAAATTACATCAT-GTGCAACTGATATTTCAAAATATTATGATGATTTAGATAACT 227383 | | | |||| || || |||| | ||||||| | ||||||||||| | |||||| Sbjct 1990 TAAACATATTA-ATGATCGTGCTAAAAATATTTCTATCTATTATGATGAACT-GATAAC- 1934 Query 227384 ATGGA--ACTTATTATAAGTTATTGGGTGAAGGCACTCACACCGTTAATGGTGAAAAAAT 227441 || || | ||||| | ||||| || || |||| ||| || |||| ||||||| Sbjct 1933 ATTGACTAGTTATTGGCATTTATTAGGAGAGGGCATTCATTTAGTAAATGAAAAAAAAAT 1874 Query 227442 TGTTGTTGATATGTATGAGCTAAAGAAAAAACTATGGCTATGTATTAACAGTATTAATAT 227501 | | || || || || |||||| |||| | ||| |||||| | | ||| | ||| | Sbjct 1873 TAATATTAATTTGCATTTGCTAAAAAAAAGATTATATCTATGTTTAATAAGTGTAAATGT 1814 Query 227502 TCTAGAAGGTATTCGTTTTTATGTTTCATTTGCGTGTTCCTGGGCATACGCCGAGAACAA 227561 | |||||| ||| | ||||||||| ||||| ||||| | |||| || || | | Sbjct 1813 TTTAGAAGCAATTAGGTTTTATGTTAGTTTTGCATGTTCATTTGCATTTGCAGAAAGAGA 1754 Query 227562 TCAACTTGAGGGGAATGCTAAAATAATTAGATTGATTTGTAGGGATGAGAATTTGCATTT 227621 | | | || || ||||| ||||| || ||||| || | ||||| || ||| | Sbjct 1753 ACTAATGGAAGGAAATGCAAAAATTATAAGATTAATAGCACGTGATGAAGCATTACATCT 1694 Query 227622 AGCAGCAACTCAA 227634 | ||| ||||||| Sbjct 1693 AACAGGAACTCAA 1681 >seq21362 Length=5695 Score = 120 bits (132), Expect = 7e-22 Identities = 201/284 (71%), Gaps = 14/284 (5%) Strand=Plus/Minus Query 133908 AAAATAATCCTGATTCTCGACGTCATATT-CTAACTGCATGGAATGTTGGTGAACTAGAT 133966 |||| ||||||||||| || | || || | || |||||||||| || ||||| Sbjct 450 AAAAAAATCCTGATTCCCGTAG-AATGTTGGTTTCTAGTTGGAATGTTGAAGATATAGAT 392 Query 133967 AAAATGACTTTGCCACCATGTCAT-TGCTTTAGTCAATTCTTCGT-----AAATGACGGT 134020 ||||||| ||||| || |||||| | |||| |||||| | || | | || | Sbjct 391 AAAATGAAATTGCCTCCCTGTCATGTTCTTT-TTCAATTTTATGTTTTTAAGAAAACATT 333 Query 134021 AAGTTATCATGTATTCTATATCAACGTAGCTGTGATCTATTCTTAGGAGTACCATTCAAC 134080 ||||| ||| || ||||||||||| |||||| |||| | ||| |||| || || Sbjct 332 AAGTTGTCA---AT--TATATCAACGTTCTTGTGATGTATTTCTTGGATTACCTTTTAAT 278 Query 134081 ATTGCTTCATATTCATTACTAACTCATATGTTAGCACAAGTTTGTGGGTTAGAAGTTGGT 134140 || ||| |||||| |||| | |||||| |||||||| ||| ||| ||||||| Sbjct 277 ATAGCTAGTTATTCAATACTTATACATATGATAGCACAACAATGTAATTTAAAAGTTGGA 218 Query 134141 GAGTTTGTATGGATGGGTGGAGATGTTCACATTTATAAAAATCA 134184 || ||| |||||| || || |||||||| | ||||| ||||| Sbjct 217 GAATTTTTATGGACAGGAGGTGATGTTCATCTATATAACAATCA 174 >seq493767 Length=615 Score = 114 bits (126), Expect = 3e-20 Identities = 237/347 (68%), Gaps = 13/347 (4%) Strand=Plus/Plus Query 226941 TATGTTTTTTGATGAATCGGTAGATATTCAACGATTTGA--AACATTAAAATATCCAGCA 226998 ||||||||||| || | ||| ||||| |||| ||| | || ||||||| | Sbjct 75 TATGTTTTTTGGACAACCTGTAAATATTGCTCGATATGATCAGCA--AAAATATAATATA 132 Query 226999 TTAGAAAAGCTCACTGAATCTCAAAAAAGTTTCTTCTGGACACCTGATGAGGTAGATTTA 227058 || ||| | || | |||| ||| | || || |||| |||||| || ||||| | Sbjct 133 TTTGAACAACTAATTGAAAAACAATTATCATTTTTTTGGAGACCTGAGGAAATAGATCTT 192 Query 227059 TCTAAAGACCGAATAGATTTT--AAATCACTTACC-GATCACGAGAAGCACATATTTACT 227115 |||| ||| |||||||||||| ||||| |||| ||||| || || ||||| |||| | Sbjct 193 TCTAGAGATCGAATAGATTTTCAAAATC---TACCGGATCATGAAAAACACATTTTTATT 249 Query 227116 TCCAATCTAAAACGGCAAATTTTATTAGATTCTGTTCAAGGTAGGGGTCCAAATTTAGTA 227175 ||| ||||| |||| ||| | ||||| ||||||| || |||| ||| ||| Sbjct 250 AGTAATTTAAAATATCAAACATTACTTGATTCAATTCAAGGAAGAAGTCCTAATATAGCT 309 Query 227176 CTGTTGCCATATGCATCATTACCAGAACTTGAAAATTTTATTGAAACATGGTCATTTTTT 227235 | || || | || | |||||||| |||| | |||||||||||||| |||| Sbjct 310 TTTTTACCTATTATTTCTATTCCAGAACTGGAAACATGGATTGAAACATGGTCTTTTTCA 369 Query 227236 GAAGGTTCTATACATAGTAAATCATATACACATATTATTCGAAATAT 227282 ||| |||| ||| || ||||| ||||| || ||||||| Sbjct 370 GAA---ACTATTCATTCACGTTCTTATACTCATATAATAAGAAATAT 413 >seq159469 Length=1977 Score = 111 bits (122), Expect = 4e-19 Identities = 442/685 (65%), Gaps = 13/685 (2%) Strand=Plus/Minus Query 224572 GGTGATGCTGTTCATACTGGATTGATTCCATTCCTACACGCAGTTGCTAAAA-CTGTTAA 224630 ||||| || |||||||||| | || || || || | || || | || | || || Sbjct 1500 GGTGAAGCATTTCATACTGGTTGTATACCTTTT-TATAAACACTTTCAAAGTGCCGTAAA 1442 Query 224631 ATCTTGTTCTCAAGGTGGTGTGCGTGGTGGTGCAGCAACAGTCCACTTCCCATTGTGGCA 224690 ||| ||||| ||||| || ||| | || || || ||||| | | ||| | ||||| Sbjct 1441 ATCCTGTTCACAAGGCGGAGTGAGAGGAGGAGCTGCAACTATTTTTTATCCAATATGGCA 1382 Query 224691 TTACGAGTTTGAAGATCTTGTAGTACTAAAGAATAACAAAGGTACAGAAGTATCTCGTGT 224750 || || ||||| | | |||| |||| ||||| | ||| | |||| | | | || Sbjct 1381 TTTTGAAGTTGAAAGTTTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAATAGAGT 1322 Query 224751 TCGTCAGTTGGATTATTGTTTCCAAATTAATAAAACTTTCTATCAACGCTTGATTGAACG 224810 ||||| | ||||| | |||||||||||| | |||||| | || | | | Sbjct 1321 GCGTCATATTGATTACGCACTTCAAATTAATAAATTAATGTATCAAAGAATGTTATCAGG 1262 Query 224811 TAAAGATATTA-CTTTCTTCTCTCCAAGTGATGTTCCTGGTTTGTATGATGCATTCTGTG 224869 | | ||| || | || || ||| ||||||||||| | || || | ||| | | Sbjct 1261 -AGATATAATAACATTATTTAGTCCTTCTGATGTTCCTGAACTATACGAAGTATTTTTTT 1203 Query 224870 CAGACCAAGAAAAATTTGAAAAGCTATACACTAAGTATGAAGCTGATCCAAATATTCGTA 224929 |||| ||| ||||||||||| | | || | | | |||||| ||| |||||| | | Sbjct 1202 CAGATCAAAAAAAATTTGAAGAAATGTATATTCAATATGAAAAAGATAAAAATATAAGAA 1143 Query 224930 AGAAAACTATGCCAGCACTAGAAGTGTTCTCTCAACTAATGAATGAACGTTCTGAAACTG 224989 | |||| || ||||||||| | || || | | ||| | ||| | || |||| Sbjct 1142 AAAAAAGAATTAAAGCACTAGATCTTTTTTCATTAATGATGCAAGAAAGAACTTCCACTG 1083 Query 224990 GACGTATCTATATCCAGAATATTGA-CTTAGTTAACGAACACTCACCATTTGATCCTTCA 225048 ||||||| ||||| || ||| | || | | | ||| ||| ||||| ||||| || Sbjct 1082 GACGTATTTATATACAAAATGTAGATCATTG-TAATTCACATAGTTCATTTAATCCTGCA 1024 Query 225049 GTAGCTCCGATTGAACAAAGTAATCTATGTCAAGAAATCGCACTACCTTCTGTGCCATTC 225108 || |||| || |||| |||| ||||| |||||| || |||| || | || Sbjct 1023 TTATCTCCAATAAGACAATCTAATTTATGTTTAGAAATTACATTACCCACTAAAGCTTT- 965 Query 225109 GAAGACGTAAAAGATGATGAAAATGGTTTAATCAGTCTCTGTACTTTAGCAGCAATTAAT 225168 | | | | |||||| |||||| ||| || ||||| ||| |||| ||||| Sbjct 964 --AAATGATATTTATGATGCAAATGGAGAAATTGCACTTTGTACGTTATCAGCTTTTAAT 907 Query 225169 TGGGGTAATTTCGATTCTCCAGAAGAAATGCAAGAAGCGTGTGAGT--TATCAGTACGTG 225226 | ||| | ||||| || | ||| | ||||| | | | |||| ||||||| Sbjct 906 TTAGGTGCTATCGATAATCTTAATGAATTAAAAGAA--TTAGCAATACTATCCGTACGTG 849 Query 225227 CATTAGATGCATTACTAGACTATCA 225251 || | || | | || |||| ||||| Sbjct 848 CACTTGACGAAATATTAGAATATCA 824 >seq243076 Length=1367 Score = 102 bits (112), Expect = 2e-16 Identities = 171/245 (70%), Gaps = 12/245 (5%) Strand=Plus/Plus Query 133946 TGGAATGTTGGTGAACTAGATAAAATGACTTTGCCACCATGTCAT-TGCTTTAGTCAATT 134004 ||||||||||||||| ||||||| |||| || || || |||||| | |||| |||||| Sbjct 874 TGGAATGTTGGTGAAATAGATAACATGAGATTACCTCCTTGTCATGTTCTTTT-TCAATT 932 Query 134005 CTTCGT-----AAATGACGGTAAGTTATCATGTATTCTATATCAACGTAGCTGTGATCTA 134059 | || ||| || |||| | ||| || || ||||| |||||| || Sbjct 933 TTATGTTTTTAAAAAAACACTAAGCTGTCAA-----CTTTACCAACGCTCTTGTGATGTA 987 Query 134060 TTCTTAGGAGTACCATTCAACATTGCTTCATATTCATTACTAACTCATATGTTAGCACAA 134119 || ||||| | || || || || ||| |||||| | ||| |||||| ||||||| Sbjct 988 TTTCTAGGACTCCCTTTTAATATAGCTAGTTATTCAATGCTACTACATATGATAGCACAG 1047 Query 134120 GTTTGTGGGTTAGAAGTTGGTGAGTTTGTATGGATGGGTGGAGATGTTCACATTTATAAA 134179 | | ||| ||||||| || ||| |||||| ||||| ||||| || | |||||| Sbjct 1048 CAATCTAATTTAAAAGTTGGAGAATTTTTATGGACAGGTGGTGATGTGCATTTATATAAA 1107 Query 134180 AATCA 134184 ||||| Sbjct 1108 AATCA 1112 >seq240997 Length=1378 Score = 96.9 bits (106), Expect = 8e-15 Identities = 212/314 (68%), Gaps = 9/314 (3%) Strand=Plus/Plus Query 111522 AACAAGTTGGTGCAGATTTTCCGGTATATTTGTCGCCTGA---AGGTGATGAATATGCAC 111578 |||||||||| ||||||||| || | ||| || || | ||| |||||||| Sbjct 193 AACAAGTTGGGAAAGATTTTCCAGTTTTCTTGCATCCAGATACACATGAGGAATATGCTT 252 Query 111579 TTGCACGTATTGAACGTAAAACTGGTACTGGATACGATGGTTTTT---CTGTTGAAACCC 111635 | ||| | | || | ||| |||| | ||||| ||||||| ||| | | | | Sbjct 253 TGGCAAGAAAAGAGAGAAAATCTGGAAGAGGATATACTGGTTTTGATACTGATTACAGCT 312 Query 111636 AGGGTGTAACTTTGGAACAAGATTTATTCCGTCGAGATTTAACTATCAATGCTATTGCTT 111695 | ||| ||||| ||| |||||||| | | |||||||| || ||||||||||||||| Sbjct 313 CTGATGTTACTTTAGAAGAAGATTTAGTAAGACGAGATTTGACAATCAATGCTATTGCTC 372 Query 111696 GGGACCCAATTACTAAAACCCATATCGACCCATATAAAGGCAAAGAAGATCTAAAAAATA 111755 || || ||| || |||| || || | | |||| ||| |||||||| || | Sbjct 373 AAGA--TAAATACGGTAA-TTATATTGATCCTTTTCAAGGTAAAAAAGATCTAGAATGTC 429 Query 111756 AAGTACTGAAACATGTATCAGATGCATTCAAAGAAGATCCACTTCGTGTTCTGCGTCTTG 111815 || | |||||| ||||| | || | |||||| ||| | |||||| | ||| | | Sbjct 430 GTTTAATACGACATGTTTCAGAATCTTTTATAGAAGACCCATTGCGTGTTTTACGTGTAG 489 Query 111816 CACGTTTCGCTGCT 111829 || | || |||||| Sbjct 490 CAAGATTTGCTGCT 503 >seq30067 Length=5021 Score = 89.7 bits (98), Expect = 1e-12 Identities = 310/477 (65%), Gaps = 10/477 (2%) Strand=Plus/Plus Query 224624 CTGTTAAATCTTGTTCTCAAGGTGGTGTGCGTGGTGGTGCAGCAACAGTCCACTTCCCAT 224683 |||| ||||||||||||||||| ||||| | ||||| || ||||| | | ||| Sbjct 3561 CTGTAAAATCTTGTTCTCAAGGAGGTGTTAGAGGTGGAGCTGCAACTATTTTTTATCCAA 3620 Query 224684 TGTGGCATTACGAGTTTGAAGATCTTGTAGTACTAAAGAATAACAAAGGTACAGAAGTAT 224743 | ||||||| || ||||| || | |||| |||| || |||| || | |||| | Sbjct 3621 TATGGCATTTTGAAGTTGAAAATTTATTAGTTTTAAAAAACAACAGGGGAATTGAAGAAA 3680 Query 224744 CTCGTGTTCGTCAGTTGGATTATTGTTTCCAAATTAATAAAACTTTCTATCAACGCTTGA 224803 | | || ||||| | || ||| | |||||||||||| | |||||| | || Sbjct 3681 ATAGAGTACGTCATGTCGACTATGCAATTCAAATTAATAAATTCATGTATCAAAGAATGT 3740 Query 224804 TTGAACGTAAAGATATTACTTTCTTCTCTCCAAGTGATGTTCCTGGTTTGTATGATGCAT 224863 | | | || | || || | || ||| |||||||||| || ||||| | || Sbjct 3741 TATCAGGAAACCAAATAACACTATTTAGTCCTTCCGATGTTCCTGAGTTATATGAAGTAT 3800 Query 224864 TCTGTGCAGACCAAGAAAAATTTGAAAAGCTATACACTAAGTATGAAGCTGATCCAAATA 224923 | | | | | ||| ||||||||||| | |||| | | | |||||| | ||| | Sbjct 3801 TTTTTTCTAATCAAAAAAAATTTGAAGAAATATATATTCAATATGAAAAAAACAAAAAGA 3860 Query 224924 TTCGTAAGAAAACTATGCCAGCACTAGAAGTGTTCTC-TCAACTA---ATGAATGAACGT 224979 | | || ||||| | |||| |||| | || || | | || | ||| |||| Sbjct 3861 TAAGAAAAAAAACAGTTAAAGCATTAGATTTATTTTCATTGATTATGCAGGAAAGAAC-A 3919 Query 224980 TCTGAAACTGGACGTATCTATATCCAGAATATTGA-CTTAGTTAACGAACACTCACCATT 225038 ||| ||||||||||| ||||| || ||| | || | | | ||| ||| |||| Sbjct 3920 TCT---ACTGGACGTATTTATATACAAAATGTAGATCATTG-TAATTCACATAGTTCATT 3975 Query 225039 TGATCCTTCAGTAGCTCCGATTGAACAAAGTAATCTATGTCAAGAAATCGCACTACC 225095 | ||||| | || |||| || ||||| |||| |||| ||||| || |||| Sbjct 3976 TAATCCTGAATTATCTCCAATAAAACAATCTAATTTATGCTTGGAAATTACATTACC 4032 >seq841471 Length=314 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 97098 AGATTCACTAGATTTGGTTGAATTTATTATGGCAGTTGAAGAAGAATTTGATGCTGAAAT 97157 ||||||||| ||| | || ||||| |||||||| | ||||||||||||||| ||| || Sbjct 126 AGATTCACTTGATATAGTAGAATTAATTATGGCTATGGAAGAAGAATTTGATATTGAGAT 185 Query 97158 CTCTGATGAAGATGCAGAAAAATTTGAAACAAT 97190 || |||||||| |||||||| || | ||||| Sbjct 186 ATCAGATGAAGAAGCAGAAAACATTAATACAAT 218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1134708514862780