Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq64520 477 1e-129 seq836247 194 2e-44 seq533404 181 1e-40 seq147675 147 2e-30 seq71880 100 3e-16 seq348021 98.7 1e-15 seq10361 95.1 1e-14 seq81374 87.8 2e-12 >seq64520 Length=3547 Score = 477 bits (528), Expect = 1e-129 Identities = 564/764 (74%), Gaps = 0/764 (0%) Strand=Plus/Minus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||| ||||| |||||||||||| ||| | | ||| | || || || || Sbjct 764 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATC 705 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || |||||||| || |||||||| ||||| |||||||| | ||||||||| | || || Sbjct 704 GCCTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 645 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 || || ||||| ||||| || || || ||||| | |||||| ||| ||||| ||| Sbjct 644 CTACTTTATGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGT 585 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780 | || || || || || |||||||||||| | ||||||| ||||| || |||||||| Sbjct 584 TTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGT 525 Query 162781 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAG 162840 |||| |||| | || | |||||| | | || | | ||| |||||| || Sbjct 524 CCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG 465 Query 162841 TGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 162900 ||||| ||| || ||| | |||||||| |||||||| ||||||||| || || || Sbjct 464 TGGGAGCTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCT 405 Query 162901 GTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGAC 162960 || | || || ||||| |||||| |||| || | |||||||| || ||||| Sbjct 404 GTTGCAGCTGCGACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGAT 345 Query 162961 GCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCAC 163020 | |||||||| || |||||||||||||| |||| |||| | || ||||| || |||||| Sbjct 344 GGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCAC 285 Query 163021 AACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTC 163080 |||||||| |||||||| || || ||| | || || || ||||||||||| || || || Sbjct 284 AACATCCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTA 225 Query 163081 TTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAA 163140 |||||||||||||| |||||| | || || ||| | | ||||| ||||| || || | Sbjct 224 TTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAAT 165 Query 163141 GAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCT 163200 || || || | ||||| | ||||| ||||||||||| ||||| || || || || Sbjct 164 GAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCC 105 Query 163201 GCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCA 163260 |||||||| || ||||| || ||||||||||| ||||| |||||||||||| ||||| Sbjct 104 GCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCT 45 Query 163261 CTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTT 163304 | || |||||||| ||||| | ||||| || | |||||||| Sbjct 44 TTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTT 1 >seq836247 Length=317 Score = 194 bits (214), Expect = 2e-44 Identities = 226/305 (74%), Gaps = 0/305 (0%) Strand=Plus/Plus Query 162955 TCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCA 163014 ||||| | |||||||| | |||| ||||||||| |||| |||| | || ||||| || Sbjct 3 TCTGATGGTATGCCTCTAAGAATTTATGGTACTTTCAACTTCATGATTGTATTCCAGGCT 62 Query 163015 GAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGT 163074 |||||||||||||| |||||||| || || ||| | | || | |||||| | || Sbjct 63 GAGCACAACATCCTTATGCACCCATTTCACATGCTATGCGTAACTATTGTATTTGACGGC 122 Query 163075 TCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACT 163134 || || |||||||||||||| |||||| | || || ||| | | ||||| ||||| || Sbjct 123 TCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACA 182 Query 163135 GAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATT 163194 || | | || || | ||||| | ||| | ||||||||||| ||||| || || Sbjct 183 GAAAATAAATCTGCTAATGAAGGTTACATATTCAGTCAAGAAGAAGAAACTTATAATATC 242 Query 163195 GTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCA 163254 || || |||||||| || ||||| || ||||||||||| ||||| |||||||| ||| Sbjct 243 GTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAGCTCT 302 Query 163255 CGTTC 163259 | ||| Sbjct 303 CATTC 307 >seq533404 Length=557 Score = 181 bits (200), Expect = 1e-40 Identities = 189/247 (77%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 163242 TTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTG 163301 |||||||||||| ||||| | | |||||||| ||||| | ||||| || | ||||| Sbjct 555 TTTCAACAACTCTCGTTCTTTAAATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTG 496 Query 163302 GTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCA 163361 ||||||||| | ||| | |||||||| |||||||| || |||||||| |||||||| Sbjct 495 GTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 436 Query 163362 ATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAG 163418 ||| || ||||| ||| || || ||| ||||||||| |||||| ||||| | Sbjct 435 ATCGGTAGTTGATAGTCAAGGCCGT---GTAATTAATACTTGGGCTGATATCATTAACCG 379 Query 163419 AGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCT 163478 || |||||||||||||||||||| || ||||||||||| || ||||| || ||| | Sbjct 378 TGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACTT 319 Query 163479 TGCTGCT 163485 |||||| Sbjct 318 AGCTGCT 312 >seq147675 Length=2096 Score = 147 bits (162), Expect = 2e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 162832 GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGT-GTTGCATA 162890 |||||| ||||||| ||| || || |||||||||| ||||||| |||| |||||||| Sbjct 1501 GGTCGTGAGTGGGAGCTTAGTTTCCATCTAGGTATGCGACCTTGGA-CTGTTGTTGCATA 1443 Query 162891 CTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTC 162950 || || || || | || || ||| | |||||| |||| | | |||||||| Sbjct 1442 TTCAGCTCCTGTTACAGCTGCGACTGCTATTTTCTTGATCTACCTAATTGGTCAAGGAAG 1383 Query 162951 TTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCA 163010 || ||||| | |||||||| || |||||||||||||| |||| |||| | || ||||| Sbjct 1382 CTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCA 1323 Query 163011 AGCAGAGCACAACATCCTAATGCACCCCTT 163040 || |||||||||||||| |||||||| || Sbjct 1322 GGCTGAGCACAACATCCTTATGCACCCATT 1293 >seq71880 Length=3346 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 162964 ATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAAC 163023 |||||||| || |||| |||| |||| |||| || | | | ||||| || ||||||||| Sbjct 1574 ATGCCTCTAGGAATTTTTGGTGCTTTCAACTTCACGATTGCATTCCAGGCTGAGCACAAC 1633 Query 163024 ATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTT 163083 ||||| |||||||| || | ||| | || | | ||||||||||| | || || ||| Sbjct 1634 ATCCTTATGCACCCATTTCGAATGCTAGGCATAGTTGGTGTATTCGGAAGCTCCCTATTT 1693 Query 163084 AGTGCTATGCACGGTTCTCTTGTTACTTCT 163113 || |||||| |||||| | || | |||| Sbjct 1694 AGCATTATGCATGGTTCTTTGGTCATTTCT 1723 >seq348021 Length=939 Score = 98.7 bits (108), Expect = 1e-15 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTT 163215 ||||||| ||||| ||||||||||| ||||| || || || || |||||||| || ||| Sbjct 843 GGTTATAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTT 902 Query 163216 GGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACT 163252 || || ||||||||||| ||||| ||||||||||| Sbjct 903 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACT 939 >seq10361 Length=7172 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 163339 CTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGCAGGTGGTAAAGTGATTCCTACT 163398 || || |||||||| ||||||||||| || ||||| ||| | || ||| |||| Sbjct 371 CTAAATGGTTTCAATTTCAACCAATCGGTAGTTGATAGTCAAGGTCATGTAATTAGTACT 312 Query 163399 TGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCT 163458 ||||| | ||| |||| || |||||||| ||||||||||| || ||||||||| Sbjct 311 TGGGCTGGAATCATTAATTTTGCTAACCTTGGTATCGAAGTTATGCATGAACGTAATGCT 252 Query 163459 CACAACTTCCCACTTGACCTTGCTGCT 163485 || || ||||| || ||| | |||||| Sbjct 251 CATAATTTCCCTCTAGACTTAGCTGCT 225 >seq81374 Length=3119 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 162918 TGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTAT 162977 ||| ||||| |||| || | |||||||| || ||| | | |||||||| | || Sbjct 633 TGTTTTCTTAATCTACCCAATTGGTCAAGGAAGCTTTTCTAATGGTATGCCTCTATGAAT 574 Query 162978 TTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCC 163037 || ||||||||| |||| |||| | || |||||||| || ||||||||||| ||||| || Sbjct 573 TTTTGGTACTTTCAACTTCATGATTGTATTCCAAGCCGAACACAACATCCTTATGCATCC 514 Query 163038 CTTCCA 163043 || || Sbjct 513 ATTGCA 508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547027760948400