Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq107321 116 7e-21 seq48246 93.3 8e-14 >seq107321 Length=2628 Score = 116 bits (128), Expect = 7e-21 Identities = 297/448 (66%), Gaps = 7/448 (2%) Strand=Plus/Minus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 || |||| ||| || ||||| | |||||| || ||||| || ||| | |||| ||| Sbjct 1303 TAAAGCAAGCACGCGAAGTCACAGTGCAAACCCTCGTCTCGCGAGATCAATTCGTTCGAG 1244 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 || || || ||||| | ||| | | |||||||||||| || || |||| ||| Sbjct 1243 AATGTTAGCCCTGGCATAAGCCCTCGTTTTTTGAGCCAGAATATGGCGCAGAAACTGCCG 1184 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGC-GTT 48300 ||||||||||| || || || ||||| ||| ||| || ||| |||| | | | | Sbjct 1183 GAGAAGAAGATACCTTCGACGCAAGCGAAAGCGATGATCCGTTCTGCGAAGGTTTCAGAT 1124 Query 48301 CTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTC 48360 | | |||||| || ||||| | || ||||||| |||||| || || || || Sbjct 1123 C----CATCGATCCATCTGAGGGCCCATTTAGCTTTCTTCTGGATGCAAGGGATGGTATC 1068 Query 48361 TATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTT 48420 || || || || ||| | | ||| | ||| | || | ||| ||| Sbjct 1067 GATTGCGCGAAACAGCCTACTCTTCTCGTTGGAGTCTTTGATGTATGATTCGAGAAGCAG 1008 Query 48421 TGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGC 48480 ||||||||| ||||| | ||||| || ||||||||||| ||||||||||| | || Sbjct 1007 ACTGTACATCTCGGAGTGGATGTTCTCGATTGCGATCTGGAATCCGTAGAAGGCACGCGC 948 Query 48481 CTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCAT 48539 ||| || || || ||| | ||| | ||| || || || || || || |||| Sbjct 947 CTCCGCAACTTGGACCTCTTTCATGAA-CCGTCCGGCGAGGTTTTCCAATACGATTCCAT 889 Query 48540 CTGAAGCAGCAAAGAAGGCAAGGACATG 48567 | || || || ||||| || ||||| || Sbjct 888 CGGAGGCGGCGAAGAATGCGAGGACGTG 861 >seq48246 Length=4099 Score = 93.3 bits (102), Expect = 8e-14 Identities = 294/450 (65%), Gaps = 7/450 (2%) Strand=Plus/Plus Query 48120 CATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGG 48179 |||| |||| || ||||| || | ||| || || || || || ||| | |||| | Sbjct 1566 CATAAAGCAAACACGCAAAATCACAGTGTAATCCCTCATCTCGCGAGATTAATTCGTTCG 1625 Query 48180 AGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGC 48239 ||||| | |||||||| | ||| | | || | ||| ||||| || ||| | Sbjct 1626 AGAAGGTTAATCCAGGCATCAACCCACGTTTCTTCAACCAAAAAATCGCGCAGAAGCTTC 1685 Query 48240 CAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGT 48299 | || ||||| || || || || ||||| ||| | | | |||| | || | | Sbjct 1686 CGGAAAAGAAAATCCCTTCAACGCAAGCGAAAGCGATAATACGCTCTGCAAACGTCTC-- 1743 Query 48300 TCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCT 48359 | | | |||||| || ||||| | || ||||||| | || || || |||| Sbjct 1744 -CGAGCCATCGATCCATTTGAGAGCCCAATTCGCTTTCTTCTCAACACACGGAATAGTCT 1802 Query 48360 CTATGGCCCGGAAGAG-CTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGC 48418 | || || |||||||| || ||| |||| | |||| | |||| || ||| Sbjct 1803 CGATTGCTCGGAAGAGTCTGCTTTT-CTCATTAGAGTCCTTTATGTAGGATTCCAGAAGC 1861 Query 48419 TTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTG 48478 ||||||||| ||||| | |||||| || || |||||||| ||||||||||| | Sbjct 1862 AAACTGTACATCTCGGAGTGGATATTCTCGATGGCAATCTGGAATCCGTAGAAGGCACGC 1921 Query 48479 GCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCC 48537 ||||| || || || ||| | ||||| ||| || || || || || || || Sbjct 1922 GCCTCCGCAACTTGAACCTCTTTCATGAATC-GTCCGGCTAGGTTTTCCAAAACGATGCC 1980 Query 48538 ATCTGAAGCAGCAAAGAAGGCAAGGACATG 48567 ||| || || || |||||||||||||| || Sbjct 1981 ATCGGAGGCGGCGAAGAAGGCAAGGACGTG 2010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921331234982400