Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_019500.1 Length=168066 Score E Sequences producing significant alignments: (Bits) Value seq30067 179 4e-40 seq159469 176 5e-39 >seq30067 Length=5021 Score = 179 bits (198), Expect = 4e-40 Identities = 309/446 (69%), Gaps = 2/446 (0%) Strand=Plus/Plus Query 94808 ATATTATTCGTTTTTATGATGCTGTAAGTACCCGTCAGGTTTCATTACCAACTCCTATTA 94867 ||||| ||||||||| ||||| | ||| | | ||||||||||||| || |||| Sbjct 3273 ATATTCATCGTTTTTACAATGCTATTTCTACTTTTAAAATTTCATTACCAACACCAATTA 3332 Query 94868 TGGCTGGAGCACGTACACCAACCCGTCAATTTAGTTCTTGTGTGGTTATTGAAGCAGGCG 94927 || |||||| | || || || |||||||||||||||||||| | |||||| | | Sbjct 3333 TGTCTGGAGTCAGAACTCCTACTCGTCAATTTAGTTCTTGTGTTTTAATTGAATGTGCTG 3392 Query 94928 ACTCACTGAAAT-CTATTAACAAAACTGCTAACTCAATAATTGAATACATTTCTAAACGT 94986 | | | | |||| | ||||| || ||| ||| || || |||| |||| ||||| Sbjct 3393 A-TAATTTAAATTCCATTAATGCGACAACTAGCTCTATTGTTAAATATGTTTCCCAACGT 3451 Query 94987 GCCGGTATTGGTATCAACGTTGGTATGATTCGTGCTGAAGGTTCTCGTATTGGCATGGGC 95046 || || |||||||| || | || ||||| || ||| || |||| | | || Sbjct 3452 GCTGGAATTGGTATTAATGCAGGACAAATTCGCGCATTAGGAAGTCCTATTAGAAACGGA 3511 Query 95047 GAAGTCAAGCATACCGGTGTTATTCCATTCTGGAAACATTTCCAGACTGCTGTTAAATCA 95106 |||| ||||| ||| ||| || || | |||||||| || | ||||| ||||| Sbjct 3512 GAAGCATTTCATACTGGTTGTATACCTTTTTATAAACATTTTCAAAGCGCTGTAAAATCT 3571 Query 95107 TGTTCACAAGGTGGAATCCGTGGCGGCGCTGCTACTGCTTATTATCCTATTTGGCATTTG 95166 ||||| ||||| || | | || || ||||| ||| || |||||| || |||||||| Sbjct 3572 TGTTCTCAAGGAGGTGTTAGAGGTGGAGCTGCAACTATTTTTTATCCAATATGGCATTTT 3631 Query 95167 GAAGTTGAAAATCTGCTCGTTCTGAAAAACAACAAAGGTGTCGATGAGAACCGTATTCGC 95226 |||||||||||| | | ||| | |||||||||| || | || || || | | || Sbjct 3632 GAAGTTGAAAATTTATTAGTTTTAAAAAACAACAGGGGAATTGAAGAAAATAGAGTACGT 3691 Query 95227 CATATGGACTACGGAATCCAGATGAA 95252 ||| | ||||| | ||| || || || Sbjct 3692 CATGTCGACTATGCAATTCAAATTAA 3717 >seq159469 Length=1977 Score = 176 bits (194), Expect = 5e-39 Identities = 308/446 (69%), Gaps = 2/446 (0%) Strand=Plus/Minus Query 94808 ATATTATTCGTTTTTATGATGCTGTAAGTACCCGTCAGGTTTCATTACCAACTCCTATTA 94867 |||||| ||||||||| |||| | ||| | | ||||||||||||| || |||| Sbjct 1736 ATATTAAGCGTTTTTATAATGCAATTTCTACTTTTAAAATTTCATTACCAACACCCATTA 1677 Query 94868 TGGCTGGAGCACGTACACCAACCCGTCAATTTAGTTCTTGTGTGGTTATTGAAGCAGGCG 94927 || |||||| ||| || || || ||||| |||||||||||||| | || ||| | | Sbjct 1676 TGTCTGGAGTACGAACTCCTACTCGTCAGTTTAGTTCTTGTGTTTTAATCGAATGTGCTG 1617 Query 94928 ACTCACTGAAA-TCTATTAACAAAACTGCTAACTCAATAATTGAATACATTTCTAAACGT 94986 | | | | ||| |||||||| ||| ||| ||| || || |||| | || ||||| Sbjct 1616 A-TAATTTAAACTCTATTAATGCTACTACTAGCTCTATTGTTAAATATGTATCACAACGT 1558 Query 94987 GCCGGTATTGGTATCAACGTTGGTATGATTCGTGCTGAAGGTTCTCGTATTGGCATGGGC 95046 || || || ||||| || | || ||||| || ||| || |||| | | || Sbjct 1557 GCTGGAATCGGTATTAATGCGGGACAAATTCGCGCGTTAGGAAGTCCTATTAGAAACGGT 1498 Query 95047 GAAGTCAAGCATACCGGTGTTATTCCATTCTGGAAACATTTCCAGACTGCTGTTAAATCA 95106 |||| ||||| ||| ||| || || | ||||| || || | ||| || ||||| Sbjct 1497 GAAGCATTTCATACTGGTTGTATACCTTTTTATAAACACTTTCAAAGTGCCGTAAAATCC 1438 Query 95107 TGTTCACAAGGTGGAATCCGTGGCGGCGCTGCTACTGCTTATTATCCTATTTGGCATTTG 95166 ||||||||||| ||| | | || || ||||| ||| || |||||| || |||||||| Sbjct 1437 TGTTCACAAGGCGGAGTGAGAGGAGGAGCTGCAACTATTTTTTATCCAATATGGCATTTT 1378 Query 95167 GAAGTTGAAAATCTGCTCGTTCTGAAAAACAACAAAGGTGTCGATGAGAACCGTATTCGC 95226 |||||||||| | | | ||| | ||||| || | ||| | || || || | | || Sbjct 1377 GAAGTTGAAAGTTTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAATAGAGTGCGT 1318 Query 95227 CATATGGACTACGGAATCCAGATGAA 95252 ||||| || |||| | | || || || Sbjct 1317 CATATTGATTACGCACTTCAAATTAA 1292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531794829645600