Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_019501.1 Length=39646 Score E Sequences producing significant alignments: (Bits) Value seq227744 149 2e-31 seq342690 123 6e-24 >seq227744 Length=1455 Score = 149 bits (164), Expect = 2e-31 Identities = 238/342 (70%), Gaps = 0/342 (0%) Strand=Plus/Minus Query 4176 ACCAAGCATTTGCATGGTTCCACCAACGCCCACGATGACTTCGGTAGTGAACCTATCCTG 4235 ||| | ||||||||| || ||||||| || || | ||| |||||| | | || | Sbjct 449 ACCTAACATTTGCATTGTACCACCAATATTTACAATAATTTCTGTAGTGTAACGTTCAAG 390 Query 4236 TCCGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTTCCTTCAAGATAAACCTCAGAGCC 4295 ||| ||||||| ||||||||||| || | || |||||||| ||| || | ||| || Sbjct 389 TCCATTTTGATCTTGCCATTTTCTAGTTTGTAACGATCCTTCAATATATACTTGAGAACC 330 Query 4296 TTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACGCGGTGCCA 4355 |||||| |||||||||| ||||||||||| | ||| || | || | || ||||| Sbjct 329 TTTTCGAAGATATTCGCCAGCAATTTCTGCTAATTTTCCAAATAAAACTATTCGATGCCA 270 Query 4356 CTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGCAAC 4415 || || | || || | || ||||| | ||||| ||| | |||||| ||||| | Sbjct 269 TTCTGTTTTTTCTTTATTTTCCCCAGTGTTTTTATCTTTCCAATTTTCTGAAGTAGCTAA 210 Query 4416 TGTAAGGTTTGCAAATGCCGTTCCTGATGGTGAATATCTGATTTCTGGATCATGCCCAAG 4475 ||| | ||| | | ||| | || ||| ||| | | ||| ||||| ||||| | Sbjct 209 TGTCATATTTACTACTGCATTACCATTTGGCATATAACGAACTTCAGGATCTTGCCCTAA 150 Query 4476 GCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCAT 4517 | ||||||| || || |||||||| ||||| || ||||| Sbjct 149 ATGCCCAATAAGAATAACTTTATTTACACCTCTACTGGCCAT 108 >seq342690 Length=956 Score = 123 bits (136), Expect = 6e-24 Identities = 235/344 (68%), Gaps = 4/344 (1%) Strand=Plus/Plus Query 4176 ACCAAGCATTTGCATGGTTCCACCAACGCCCACGATGACTTCGGTAGTGAACCTATCCTG 4235 ||| | ||||||||| || ||||||| || | | ||| ||||| | | || Sbjct 585 ACCTAACATTTGCATAGTCCCACCAATATTTACAACAATTTCTGTAGTATAACGTTCTAA 644 Query 4236 TCCGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTTCCTTCAAGATAAACCTCAGAGCC 4295 || |||| || ||||||||||| || | | | |||||||| ||| || | ||| || Sbjct 645 ACCATTTTGGTCTTGCCATTTTCTAGTTTGTAGTGATCCTTCAATATATACTTGAGAACC 704 Query 4296 TTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACGCGGTGCCA 4355 |||||| |||||||| | |||||||||||| | ||| || | ||| | | ||||| Sbjct 705 TTTTCGAAGATATTCACCGGCAATTTCTGCTAATTTTCCAAATAATACTATTCTATGCCA 764 Query 4356 CTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGCAAC 4415 || || | || || | |||||||| | ||||| ||| | |||||| || || | Sbjct 765 TTCTGTTTTTTCTTTATTTTCTCCAGTATTTTTATCTTTCCAATTTTCTGAAGTTGCTAA 824 Query 4416 TGTAAGGTTTGCAAATGCCGTTCCTGATGGTGAATAT--CTGATTTCTGGATCATGCCCA 4473 || | ||| | | ||| | || || | | |||| | | ||||||||| || || Sbjct 825 AGTCATATTTACTACTGCATTACC--ATTGGGCATATAACGTACTTCTGGATCTTGTCCT 882 Query 4474 AGGCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCAT 4517 | | ||||||| || || ||||| |||||||| |||||||| Sbjct 883 AAATGTCCAATAAGAATAACTTTATTAACGCCTCTACTTGCCAT 926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125426963334560