Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_019503.1 Length=166499 Score E Sequences producing significant alignments: (Bits) Value seq159469 235 6e-57 seq30067 217 2e-51 >seq159469 Length=1977 Score = 235 bits (260), Expect = 6e-57 Identities = 323/450 (72%), Gaps = 6/450 (1%) Strand=Plus/Plus Query 138485 CATTAGGTCATTCAGTTGAACGCCATAATCCATATGACGGATACGGTTTTCTTCTACACC 138544 ||||| | ||| | ||||| | ||||| |||||||| | | |||||||| | || Sbjct 1282 CATTAATTTATTAATTTGAAGTGCGTAATCAATATGACGCACTCTATTTTCTTCAATTCC 1341 Query 138545 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 138604 | | |||||||| ||||| | | | |||||||||| |||||||| || |||||| || Sbjct 1342 TCTATTATTTTTTAAAACTAATAAACTTTCAACTTCAAAATGCCATATTGGATAAAAAAT 1401 Query 138605 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACAGCAGTCTGAAAATG 138664 ||| ||||| || || | | ||| || |||||||| ||||| || ||| | ||||| || Sbjct 1402 AGTTGCAGCTCCTCCTCTCACTCCGCCTTGTGAACAGGATTTTACGGCACTTTGAAAGTG 1461 Query 138665 TTTCCAAAAAGGAATAACACCAGTATGACGTACTTCACCTGTACCAATCTTAGAACCTTC 138724 ||| ||||||| ||| |||||||||| | ||||||| | | ||| | ||| Sbjct 1462 TTTATAAAAAGGTATACAACCAGTATGAAATGCTTCACCGTTTCTAATAGGACTTCCTAA 1521 Query 138725 GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAAT 138784 || ||||| || | |||||||| |||||||| |||| || | ||||| |||||| Sbjct 1522 CGCGCGAATTTGTCCCGCATTAATACCGATTCCAGCACGTTGTGATACATATTTAACAAT 1581 Query 138785 TGA---AGCAGAAGCCTTATTGATAGACTTTAATGAATCACCTGCTTCAATAACAACGCA 138841 || || || ||| ||| ||||| ||||| |||| | ||| || | ||| || Sbjct 1582 AGAGCTAGTAGTAGCATTA---ATAGAGTTTAAATTATCAGCACATTCGATTAAAACACA 1638 Query 138842 TGAACTAAACTGCCGAGTTGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAGTGAAAT 138901 ||||||||||| ||||| ||||| || |||| |||||| || ||||| | |||||| Sbjct 1639 AGAACTAAACTGACGAGTAGGAGTTCGTACTCCAGACATAATGGGTGTTGGTAATGAAAT 1698 Query 138902 CTGTCGAGTAGATACTGCTTCATAAAAACG 138931 | |||||| | ||| | ||||||||| Sbjct 1699 TTTAAAAGTAGAAATTGCATTATAAAAACG 1728 >seq30067 Length=5021 Score = 217 bits (240), Expect = 2e-51 Identities = 311/438 (71%), Gaps = 0/438 (0%) Strand=Plus/Minus Query 138494 ATTCAGTTGAACGCCATAATCCATATGACGGATACGGTTTTCTTCTACACCTTTGTTATT 138553 ||| | ||||| |||| || | |||||| | | |||||||| | || |||| || Sbjct 3718 ATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCTGTTGTT 3659 Query 138554 TTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGC 138613 ||| ||||| | | |||||||||||| |||||||| || |||||| || ||| ||||| Sbjct 3658 TTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGC 3599 Query 138614 GCCGCCACGAATTCCACCCTGTGAACATGATTTAACAGCAGTCTGAAAATGTTTCCAAAA 138673 || || | || || || || ||||| ||||| ||||| | ||||||||||| |||| Sbjct 3598 TCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTTATAAAA 3539 Query 138674 AGGAATAACACCAGTATGACGTACTTCACCTGTACCAATCTTAGAACCTTCGGCACGAAT 138733 ||| ||| |||||||||| | |||| || | | ||| | ||| || ||||| Sbjct 3538 AGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAATGCGCGAAT 3479 Query 138734 CATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAATTGAAGCAGA 138793 || | ||||||||||||||||| |||| ||| | ||||| |||||| || || Sbjct 3478 TTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAATAGAGCTAGT 3419 Query 138794 AGCCTTATTGATAGACTTTAATGAATCACCTGCTTCAATAACAACGCATGAACTAAACTG 138853 | | ||| || || ||||| |||| | |||||| | ||| || |||||||| || Sbjct 3418 TGTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGAACTAAATTG 3359 Query 138854 CCGAGTTGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAGTGAAATCTGTCGAGTAGA 138913 ||||| ||||| | | |||| |||||| || ||||| | |||||| | |||||| Sbjct 3358 ACGAGTAGGAGTTCTGACTCCAGACATAATTGGTGTTGGTAATGAAATTTTAAAAGTAGA 3299 Query 138914 TACTGCTTCATAAAAACG 138931 | || | |||||||| Sbjct 3298 AATAGCATTGTAAAAACG 3281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526835344220400