Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_019538.1 Length=231743 Score E Sequences producing significant alignments: (Bits) Value seq159469 134 2e-26 seq30067 127 3e-24 seq408088 93.3 6e-14 >seq159469 Length=1977 Score = 134 bits (148), Expect = 2e-26 Identities = 271/400 (68%), Gaps = 4/400 (1%) Strand=Plus/Plus Query 119923 TTTCATCAGTACCCTTGTTATTCTTCAATACAAGCAGTTTCTCAACCTCCAAATGCCACA 119982 |||| ||| | || | ||||| || || || | | | ||||| || |||||||| | Sbjct 1329 TTTCTTCAATTCCTCTATTATTTTTTAAAACTAATAAACTTTCAACTTCAAAATGCCATA 1388 Query 119983 TAGGGTAATTCAGAGTAGCAGAGCCGCCACGTAGAGCACCTTGCGAACAGCTCTTAACCG 120042 | || ||| | ||| |||| || || | | | ||||| |||||| || || | Sbjct 1389 TTGGATAAAAAATAGTTGCAGCTCCTCCTCTCACTCCGCCTTGTGAACAGGATTTTACGG 1448 Query 120043 CAGTATGGAAGTGCTTGTAGAATGGGATTACGCCGGTATGGGTTGCTTCGCCGTTGCGAA 120102 || | || ||||| || || || || || || ||||| |||||| ||||| | || Sbjct 1449 CACTTTGAAAGTGTTTATAAAAAGGTATACAACCAGTATGAAATGCTTCACCGTTTCTAA 1508 Query 120103 TTGGTGAACCCTCCGCACGAATAGCACCAGCATTAATACCAATACCAGCACGTTGACTGA 120162 | || || ||| ||||| || ||||||||||| || ||||||||||| ||| Sbjct 1509 TAGGACTTCCTAACGCGCGAATTTGTCCCGCATTAATACCGATTCCAGCACGTTG--TGA 1566 Query 120163 T--ATAACTAATAATAGATGCAGACGTATCGTTAATAGATTTCAGAGAATCGCCGGATTC 120220 | ||| ||| |||||| || ||| | |||||||| || | | ||| | |||| Sbjct 1567 TACATATTTAACAATAGAGCTAGTAGTAGCATTAATAGAGTTTAAATTATCAGCACATTC 1626 Query 120221 AATTTTCACACACGAACTAAATTGGCGCGTTGGGGTGCGGGCACCACCCAAAATAGGGGT 120280 ||| ||||| |||||||| || || || || || || | ||| || ||| || || Sbjct 1627 GATTAAAACACAAGAACTAAACTGACGAGTAGGAGTTCGTACTCCAGACATAATGGGTGT 1686 Query 120281 TGGGATTGAAATCTTAAATAGAGAAGCCGCATTATAATAA 120320 ||| | |||||| ||||| |||| ||||||||| || Sbjct 1687 TGGTAATGAAATTTTAAAAGTAGAAATTGCATTATAAAAA 1726 >seq30067 Length=5021 Score = 127 bits (140), Expect = 3e-24 Identities = 267/398 (67%), Gaps = 0/398 (0%) Strand=Plus/Minus Query 119923 TTTCATCAGTACCCTTGTTATTCTTCAATACAAGCAGTTTCTCAACCTCCAAATGCCACA 119982 |||| ||| | ||| |||| || || || || | | || ||||| || |||||||| | Sbjct 3680 TTTCTTCAATTCCCCTGTTGTTTTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATA 3621 Query 119983 TAGGGTAATTCAGAGTAGCAGAGCCGCCACGTAGAGCACCTTGCGAACAGCTCTTAACCG 120042 | || ||| | ||| |||| || || | | | | ||||| ||||| || || | Sbjct 3620 TTGGATAAAAAATAGTTGCAGCTCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAG 3561 Query 120043 CAGTATGGAAGTGCTTGTAGAATGGGATTACGCCGGTATGGGTTGCTTCGCCGTTGCGAA 120102 | | || || || || || || || || || ||||| |||||| ||||| | || Sbjct 3560 CGCTTTGAAAATGTTTATAAAAAGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAA 3501 Query 120103 TTGGTGAACCCTCCGCACGAATAGCACCAGCATTAATACCAATACCAGCACGTTGACTGA 120162 | || || || ||||| || |||||||||||||| ||||||||||| | Sbjct 3500 TAGGACTTCCTAATGCGCGAATTTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAA 3441 Query 120163 TATAACTAATAATAGATGCAGACGTATCGTTAATAGATTTCAGAGAATCGCCGGATTCAA 120222 ||| ||| |||||| || || | ||||| || || | | ||| | |||||| Sbjct 3440 CATATTTAACAATAGAGCTAGTTGTCGCATTAATGGAATTTAAATTATCAGCACATTCAA 3381 Query 120223 TTTTCACACACGAACTAAATTGGCGCGTTGGGGTGCGGGCACCACCCAAAATAGGGGTTG 120282 || ||||| ||||||||||| || || || || | | | ||| || ||| || |||| Sbjct 3380 TTAAAACACAAGAACTAAATTGACGAGTAGGAGTTCTGACTCCAGACATAATTGGTGTTG 3321 Query 120283 GGATTGAAATCTTAAATAGAGAAGCCGCATTATAATAA 120320 | | |||||| ||||| |||| ||||| ||| || Sbjct 3320 GTAATGAAATTTTAAAAGTAGAAATAGCATTGTAAAAA 3283 >seq408088 Length=780 Score = 93.3 bits (102), Expect = 6e-14 Identities = 76/90 (84%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 198934 TGGCCCCTTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGGTTCGA 198993 |||||| |||||||||| ||| ||||||| ||||||||||||| |||||| ||||||| | Sbjct 620 TGGCCCTTTAGCTCAGT-GGTAAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAA 678 Query 198994 GTCCAGTAGGGGCCACCAGATAAAGGGAAA 199023 ||||| | |||||| || ||||| | ||| Sbjct 679 ATCCAGCAAGGGCCATCA-ATAAAAGCAAA 707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 733329707386800