Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_019909.1 Length=168809 Score E Sequences producing significant alignments: (Bits) Value seq408088 107 2e-18 seq118173 102 9e-17 >seq408088 Length=780 Score = 107 bits (118), Expect = 2e-18 Identities = 75/84 (89%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 74901 TTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCTAAC 74960 ||| |||||||| ||||||||||||||| |||||| ||||||||||||| ||||||| || Sbjct 697 TTGATGGCCCTTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTTAC 638 Query 74961 CATCTGAGCTAAAGGGCCTTTGTT 74984 || ||||||||||||||| || || Sbjct 637 CA-CTGAGCTAAAGGGCCATTTTT 615 >seq118173 Length=2464 Score = 102 bits (112), Expect = 9e-17 Identities = 193/282 (68%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 143341 TTTCGCATGATATGAGTATAAGAACGACTATGGATAGTTTCAGAGAAAGTCCATGTAGCA 143400 |||| || |||||||||||||||||| ||| |||||||| || |||| |||||| || Sbjct 2036 TTTCTAATTATATGAGTATAAGAACGAGAATGTATAGTTTCTGAAAAAGACCATGTTTCA 2095 Query 143401 ACCCATGTATCTAATGCTGGGTCAGAAATAAGTGGCATCAATACCGACGAAGGTGCACGA 143460 |||||||| |||| | | || |||||| | ||| | || | ||| | Sbjct 2096 ACCCATGTCTCTAGTTCAGGAATAGAAATGATTGGTAAAAAAGCTATATTAGGGCTTCTT 2155 Query 143461 CCTTGGATAGTGTCTAATAATGACTGATATTTCAAATTATCAACAAAAATATTTTGTTGG 143520 ||||| |||| || | ||||| |||||||| |||||| || |||||||| || || Sbjct 2156 CCTTGAATAGAATCAAGTAATGTTTGATATTTTAAATTACTAATAAAAATATGTTTTTCA 2215 Query 143521 TGAGGAAGAAGGCGGTCGAATTGGCCTTTATCTGTCA----TTAGATTAACTTCTTCAGG 143576 | | | | | | | || | || | ||| ||| |||| | ||||||||| Sbjct 2216 TTATTAGGTAAGTTTTGAAAAT---CTAT-TCTATCACGAGAGAGATCTATTTCTTCAGG 2271 Query 143577 TCGCCaaaaaaaTCCAAGTTGCTTTTCTGTCAATTCTTCAAA 143618 || |||||||||| | ||| ||||| | |||| |||||| Sbjct 2272 TCTCCAAAAAAATGATAATTGTTTTTCAATTAATTGTTCAAA 2313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534146391656400