Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq27206 113 4e-20 seq75854 109 5e-19 seq48514 84.2 2e-11 >seq27206 Length=5223 Score = 113 bits (124), Expect = 4e-20 Identities = 167/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || || || || || ||||| || ||||| || || || ||| ||| Sbjct 3058 AATGCAGATCTTCGTCAAGACGTTAACCGGGAAAACAATCACTCTAGAGGTTGAAAGTTC 2999 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGA-GGGAGTGC-CCGTAGAT 28670 || ||| | | | || ||||| || || |||||||| |||| | | ||| ||| Sbjct 2998 TGATACGATCGACAATGTCAAGGCTAAGATTCAAGACAAAGAAGGGATTCCACCG--GAT 2941 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 |||||| | || |||||||| || || || ||||||||| || |||| | || |||||| Sbjct 2940 CAACAGCGTCTGATCTTTGCCGGGAAGCAGTTGGAAGATGGTAGAACTTTAGCTGATTAT 2881 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||||| ||||| ||| |||| | || | ||||| | |||||||| Sbjct 2880 AACATTCAAAAGGAATCGACTTTGCATCTTGTTCTGAGATTGAGGGGAGGGAT 2828 >seq75854 Length=3247 Score = 109 bits (120), Expect = 5e-19 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || || || || || ||||| || ||||| || || || ||| ||| Sbjct 2568 AATGCAGATCTTCGTTAAGACGTTAACTGGAAAAACAATCACATTGGAGGTTGAAAGTTC 2509 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGA-GGGAGTGC-CCGTAGAT 28670 || ||| | | | || | ||| || || |||||||| |||| | | ||| ||| Sbjct 2508 TGATACGATCGACAATGTGAAGGCTAAGATACAGGACAAAGAAGGGATTCCACCG--GAT 2451 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 |||||| | || |||||||| || || || ||||| ||| || |||| | ||||||||| Sbjct 2450 CAACAGCGTCTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTAGAACTTTAGCCGATTAT 2391 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| ||||| ||||| ||| |||| |||| || || || | |||||||| Sbjct 2390 AACATCCAAAAGGAATCGACTTTGCATCTGGTTTTGAGGTTGAGGGGAGGGAT 2338 >seq48514 Length=4088 Score = 84.2 bits (92), Expect = 2e-11 Identities = 104/139 (75%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 28647 GACAAAGA-GGGAGTGC-CCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGG 28704 |||||||| |||| | | ||| |||||||| | || ||||| | || || || |||| Sbjct 3075 GACAAAGAAGGGATTCCACCG--GATCAACAACGTCTGATCTTCGTTGGTAAGCAGTTGG 3018 Query 28705 AAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTAT 28764 ||||| || |||| | || ||||||||||| ||||| ||||| ||| |||| |||| Sbjct 3017 AAGATGGTAGAACTTTAGCTGATTATAACATCCAAAAGGAATCCACTTTGCATCTGGTTC 2958 Query 28765 TAAGATTACGAGGAGGGAT 28783 | || || | |||||||| Sbjct 2957 TGAGGTTGAGGGGAGGGAT 2939 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 ||||||||||| ||||| ||||| || || || | |||||| | |||| |||| ||| Sbjct 2826 GATCAACAGAGGCTTATATTTGCTGGGAAGCAGCTTGAAGATGAGAGAACTTTGGCTGAT 2767 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCAC 28757 || ||||||||||| ||||| ||| ||||| Sbjct 2766 TACAACATTCAAAAGGAATCAACTTTGCAC 2737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420862501695690