Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq30067 188 8e-43 seq159469 185 1e-41 seq493767 86.0 7e-12 >seq30067 Length=5021 Score = 188 bits (208), Expect = 8e-43 Identities = 315/454 (69%), Gaps = 6/454 (1%) Strand=Plus/Plus Query 40423 TTTTTATAACGCAATTTCCGATCGCAAACTGTCTCTACCGACTCCAATTATGGCGGGTGT 40482 |||||| || || ||||| | ||| | || |||| || ||||||||| | || || Sbjct 3283 TTTTTACAATGCTATTTCTACTTTTAAAATTTCATTACCAACACCAATTATGTCTGGAGT 3342 Query 40483 ACGTACTCCTACGCGCCAGTTCTCCAGTTGTGTAGTAATTGAATCGGGTGATTCTCTTGG 40542 | |||||||| || || || |||||| ||||||||| | |||| | | Sbjct 3343 CAGAACTCCTACTCGTCAATTTAGTTCTTGTGTTTTAATTGAATGTGCTGATAATTTAAA 3402 Query 40543 TTCTCTTAACGCTGTAAC---CTCTGCGATCGTGAAGTATATTTCACAACGTGCTGGTAT 40599 ||| |||| || ||| |||| || || || ||| |||| ||||||||||| || Sbjct 3403 TTCCATTAATGCGACAACTAGCTCT---ATTGTTAAATATGTTTCCCAACGTGCTGGAAT 3459 Query 40600 TGGGGTTAACGCGGGACATATTCGCGCAATGGGTTCTAAAATCCGTGGTGGTGAAGCTGT 40659 ||| |||| || ||||| ||||||||| | || | || | || ||||| | Sbjct 3460 TGGTATTAATGCAGGACAAATTCGCGCATTAGGAAGTCCTATTAGAAACGGAGAAGCATT 3519 Query 40660 TCATACTGGTGTGATTCCTTTCTGGAAACATATTCAAACCGCTGTTAAATCCTGTTCACA 40719 |||||||||| || ||||| | |||||| |||||| |||||| ||||| ||||| || Sbjct 3520 TCATACTGGTTGTATACCTTTTTATAAACATTTTCAAAGCGCTGTAAAATCTTGTTCTCA 3579 Query 40720 GGGTGGCGTTCGTGGTGGTGCTGCAACACTGTATTATCCTTTCTGGCATCTGGAAGTTGA 40779 || || ||| | ||||| |||||||| | | |||||| | |||||| | |||||||| Sbjct 3580 AGGAGGTGTTAGAGGTGGAGCTGCAACTATTTTTTATCCAATATGGCATTTTGAAGTTGA 3639 Query 40780 AAACCTTCTGGTGTTGAAGAACAACAAAGGCGTAGAAGAAAACCGCGTTCGTCATCTTGA 40839 ||| | | || || || ||||||| || | |||||||| | || |||||| | || Sbjct 3640 AAATTTATTAGTTTTAAAAAACAACAGGGGAATTGAAGAAAATAGAGTACGTCATGTCGA 3699 Query 40840 TTATGGTGTACAGCTTAACCAGTTGATGTATAAA 40873 |||| | || |||| | || |||||| || Sbjct 3700 CTATGCAATTCAAATTAATAAATTCATGTATCAA 3733 >seq159469 Length=1977 Score = 185 bits (204), Expect = 1e-41 Identities = 314/454 (69%), Gaps = 6/454 (1%) Strand=Plus/Minus Query 40423 TTTTTATAACGCAATTTCCGATCGCAAACTGTCTCTACCGACTCCAATTATGGCGGGTGT 40482 ||||||||| |||||||| | ||| | || |||| || || |||||| | || || Sbjct 1726 TTTTTATAATGCAATTTCTACTTTTAAAATTTCATTACCAACACCCATTATGTCTGGAGT 1667 Query 40483 ACGTACTCCTACGCGCCAGTTCTCCAGTTGTGTAGTAATTGAATCGGGTGATTCTCTTGG 40542 ||| |||||||| || ||||| |||||| |||| |||| | |||| | | Sbjct 1666 ACGAACTCCTACTCGTCAGTTTAGTTCTTGTGTTTTAATCGAATGTGCTGATAATTTAAA 1607 Query 40543 TTCTCTTAACGCTGTAAC---CTCTGCGATCGTGAAGTATATTTCACAACGTGCTGGTAT 40599 ||| |||| ||| || |||| || || || ||| | |||||||||||||| || Sbjct 1606 CTCTATTAATGCTACTACTAGCTCT---ATTGTTAAATATGTATCACAACGTGCTGGAAT 1550 Query 40600 TGGGGTTAACGCGGGACATATTCGCGCAATGGGTTCTAAAATCCGTGGTGGTGAAGCTGT 40659 || |||| |||||||| |||||||| | || | || | |||||||| | Sbjct 1549 CGGTATTAATGCGGGACAAATTCGCGCGTTAGGAAGTCCTATTAGAAACGGTGAAGCATT 1490 Query 40660 TCATACTGGTGTGATTCCTTTCTGGAAACATATTCAAACCGCTGTTAAATCCTGTTCACA 40719 |||||||||| || ||||| | ||||| |||||| || || |||||||||||||| Sbjct 1489 TCATACTGGTTGTATACCTTTTTATAAACACTTTCAAAGTGCCGTAAAATCCTGTTCACA 1430 Query 40720 GGGTGGCGTTCGTGGTGGTGCTGCAACACTGTATTATCCTTTCTGGCATCTGGAAGTTGA 40779 || || || | || || |||||||| | | |||||| | |||||| | |||||||| Sbjct 1429 AGGCGGAGTGAGAGGAGGAGCTGCAACTATTTTTTATCCAATATGGCATTTTGAAGTTGA 1370 Query 40780 AAACCTTCTGGTGTTGAAGAACAACAAAGGCGTAGAAGAAAACCGCGTTCGTCATCTTGA 40839 || | | || || || || || | ||| | |||||||| | || |||||| |||| Sbjct 1369 AAGTTTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAATAGAGTGCGTCATATTGA 1310 Query 40840 TTATGGTGTACAGCTTAACCAGTTGATGTATAAA 40873 ||| | | || |||| | || |||||| || Sbjct 1309 TTACGCACTTCAAATTAATAAATTAATGTATCAA 1276 >seq493767 Length=615 Score = 86.0 bits (94), Expect = 7e-12 Identities = 226/341 (66%), Gaps = 3/341 (1%) Strand=Plus/Plus Query 42168 ACTTAGAACAACCTATGTTTTTTGGTGAAGATACTGGTGTTGCACGTTATGAATCGCAGA 42227 ||||| || |||||||||||||||| || | | |||| || ||||| ||| | Sbjct 63 ACTTA-AAGAACCTATGTTTTTTGGACAACCTGTAAATATTGCTCGATATGATCAGCAAA 121 Query 42228 AACACAAAGTTTTCGAAAGCCTGACGCAAAAACAGCTTTCTTTCTTCTGGCGTCCGGAAG 42287 || | || | || ||| || | ||||||| | || || || ||| | || || | Sbjct 122 AATATAATATATTTGAACAACTAATTGAAAAACAATTATCATTTTTTTGGAGACCTGAGG 181 Query 42288 AAGTCGATCTGTCTACTGACCGTATGCAGTATGCAAAACTTCCTGAACATGAAAAAATCA 42347 || | ||||| |||| || || || | | | ||| || || || ||||||||| || Sbjct 182 AAATAGATCTTTCTAGAGATCGAATAGATTTTCAAAATCTACCGGATCATGAAAAACACA 241 Query 42348 TTTTCGATTCTAACCTACAGTATCAAACCCTGTTAGATACCATTCAGGGACGTGGGCCTA 42407 |||| | ||| || | |||||||| | | ||| | ||||| ||| | | |||| Sbjct 242 TTTTTATTAGTAATTTAAAATATCAAACATTACTTGATTCAATTCAAGGAAGAAGTCCTA 301 Query 42408 ACCTCGCATTTTTGCCAATTGCATCCGATGTGAGCA-TGGAAACCTGGATCGAAACGTGG 42466 | | || ||||| || ||| | | || || | ||||||| ||||| ||||| ||| Sbjct 302 ATATAGCTTTTTTACCTATT-ATTTCTATTCCAGAACTGGAAACATGGATTGAAACATGG 360 Query 42467 GCGTTTAGTGAAACCATCCACAGCCGTAGTTACACGCATAT 42507 | ||| ||||| || || ||| ||| || ||||| Sbjct 361 TCTTTTTCAGAAACTATTCATTCACGTTCTTATACTCATAT 401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551882802838800