Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_020416.1 Length=160221 Score E Sequences producing significant alignments: (Bits) Value seq30067 230 2e-55 seq159469 224 1e-53 >seq30067 Length=5021 Score = 230 bits (254), Expect = 2e-55 Identities = 324/455 (71%), Gaps = 0/455 (0%) Strand=Plus/Minus Query 133783 CATCAAATCATTGATTTGCAGACCGTAATCTAGATGACGAATGCGGTTTTCATCTACACC 133842 ||| || | ||| ||||| | | || || | |||||| | | ||||| || | || Sbjct 3727 CATGAATTTATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCC 3668 Query 133843 TTTGTTGTTCTTTAATACCAACAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAG 133902 ||||||| ||||| || || | |||||||| |||| |||||| ||||||||| ||| Sbjct 3667 CCTGTTGTTTTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAAT 3608 Query 133903 AGTAGCTGCACCACCACGTACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATG 133962 ||| || || ||||| | ||||| |||||||||||||||||||| || | |||||||| Sbjct 3607 AGTTGCAGCTCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATG 3548 Query 133963 TTTCCAGAAAGGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTC 134022 ||| | ||||| || |||||||| | |||| || || | ||| ||| Sbjct 3547 TTTATAAAAAGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAA 3488 Query 134023 AGCTCGAATCATACCGGCGTTGATGCCGATACCAGCTCGCTTGCTGATATACTTAATAAT 134082 || ||||| || || || || || || ||||| || | | | ||| |||| ||| Sbjct 3487 TGCGCGAATTTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAAT 3428 Query 134083 ACTGTTACTTGCCGCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGA 134142 | | || ||| ||||||||| ||||| | ||| || |||||| | |||||||| Sbjct 3427 AGAGCTAGTTGTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGA 3368 Query 134143 ACTAAACTGACGAGTAGGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATCTG 134202 |||||| |||||||||||||| | | || | |||||| ||||| || |||||||| | Sbjct 3367 ACTAAATTGACGAGTAGGAGTTCTGACTCCAGACATAATTGGTGTTGGTAATGAAATTTT 3308 Query 134203 GCGAGTAGATACAGCATCATAAAAACGAATAATAT 134237 |||||| | ||||| ||||||||| ||||| Sbjct 3307 AAAAGTAGAAATAGCATTGTAAAAACGATGAATAT 3273 >seq159469 Length=1977 Score = 224 bits (248), Expect = 1e-53 Identities = 326/457 (71%), Gaps = 4/457 (1%) Strand=Plus/Plus Query 133783 CATCAAATCATTGATTTGCAGACCGTAATCTAGATGACGAATGCGGTTTTCATCTACACC 133842 ||| || | ||| ||||| || ||||||| | |||||| | | ||||| || | || Sbjct 1282 CATTAATTTATTAATTTGAAGTGCGTAATCAATATGACGCACTCTATTTTCTTCAATTCC 1341 Query 133843 TTTGTTGTTCTTTAATACCAACAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAG 133902 | | || || ||||| || || | ||||||| |||| |||||| ||||||||| ||| Sbjct 1342 TCTATTATTTTTTAAAACTAATAAACTTTCAACTTCAAAATGCCATATTGGATAAAAAAT 1401 Query 133903 AGTAGCTGCACCACCACGTACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATG 133962 ||| || || || || | || |||||||| ||||| |||||||| ||| | ||||| || Sbjct 1402 AGTTGCAGCTCCTCCTCTCACTCCGCCTTGTGAACAGGATTTTACGGCACTTTGAAAGTG 1461 Query 133963 TTTCCAGAAAGGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTC 134022 ||| | ||||| || |||||||| | |||| || || | ||| ||| Sbjct 1462 TTTATAAAAAGGTATACAACCAGTATGAAATGCTTCACCGTTTCTAATAGGACTTCCTAA 1521 Query 134023 AGCTCGAATCATACCGGCGTTGATGCCGATACCAGCTCGCTTGCTGATA--TACTTAATA 134080 || ||||| || || || || ||||| ||||| || ||| ||||| || |||| | Sbjct 1522 CGCGCGAATTTGTCCCGCATTAATACCGATTCCAGCACG-TTG-TGATACATATTTAACA 1579 Query 134081 ATACTGTTACTTGCCGCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAA 134140 ||| | || | | ||||||||||| || | ||| || ||| || | |||||| Sbjct 1580 ATAGAGCTAGTAGTAGCATTAATAGAGTTTAAATTATCAGCACATTCGATTAAAACACAA 1639 Query 134141 GAACTAAACTGACGAGTAGGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATC 134200 ||||||||||||||||||||||| || | || | |||||| ||||| || |||||||| Sbjct 1640 GAACTAAACTGACGAGTAGGAGTTCGTACTCCAGACATAATGGGTGTTGGTAATGAAATT 1699 Query 134201 TGGCGAGTAGATACAGCATCATAAAAACGAATAATAT 134237 | |||||| | |||| ||||||||| |||||| Sbjct 1700 TTAAAAGTAGAAATTGCATTATAAAAACGCTTAATAT 1736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506965752963600