Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_020484.1 Length=147284 Score E Sequences producing significant alignments: (Bits) Value seq30067 158 1e-33 >seq30067 Length=5021 Score = 158 bits (174), Expect = 1e-33 Identities = 752/1190 (63%), Gaps = 30/1190 (3%) Strand=Plus/Plus Query 119987 ATATGTTGCTCAAAGGGCTGGCATTGGTATCAATGCTGGCAGAATTAGGGGAATTAATAG 120046 ||||||| | ||| | ||||| |||||||| ||||| || |||| | | | | || Sbjct 3436 ATATGTTTCCCAACGTGCTGGAATTGGTATTAATGCAGGACAAATTCGCGCATTAGGAAG 3495 Query 120047 TCGTATCCGTGGCGGAGAAGTTCAACATACCGGCGTTGTCCCATTTCTTAAAAAGTTTGA 120106 || ||| | |||||||| ||||| || | | || ||| |||| | ||| | Sbjct 3496 TCCTATTAGAAACGGAGAAGCATTTCATACTGGTTGTATACCTTTTTATAAACATTTTCA 3555 Query 120107 GGCAACGGTCAAGTGTTGTACACAAAACGGTGTTAGAGGCGGTTCAGCAACTGTACACTT 120166 | || || | |||| | ||| ||||||||||| || | |||||| | | Sbjct 3556 AAGCGCTGTAAAATCTTGTTCTCAAGGAGGTGTTAGAGGTGGAGCTGCAACTATTTTTTA 3615 Query 120167 TCCTATTTGGCACCAAGAAATAGAAGATATACTTGTTTTAAAAAACAATAAAGGTACGGA 120226 ||| || ||||| ||| | ||| || || | |||||||||||||| | || | || Sbjct 3616 TCCAATATGGCATTTTGAAGTTGAAAATTTATTAGTTTTAAAAAACAACAGGGGAATTGA 3675 Query 120227 AGATAATAGAGTTAGAAAATTAGATTACTCTATACAATTATCAAAATTATTTTACGAAAG 120286 ||| |||||||| | | | || || | || ||| | ||||| | || |||| Sbjct 3676 AGAAAATAGAGTACGTCATGTCGACTATGCAATTCAAATTAATAAATTCATGTATCAAAG 3735 Query 120287 ATT--TATTAAGAATGAAGATATAACTTTATTCTCTCCACATGATGTGCCAGGTTTATAT 120344 | | ||| | ||| | | ||||| |||| ||| ||||| || | |||||| Sbjct 3736 AATGTTATCAGGAA--ACCAAATAACACTATTTAGTCCTTCCGATGTTCCTGAGTTATAT 3793 Query 120345 GACGCATTTGGTA------AGGAAGAGTTTGACGAATTGTATGCTTCGTATGAAAGAAAA 120398 || | |||| | | || | ||||| ||| | ||| | ||||||| ||| Sbjct 3794 GAAGTATTTTTTTCTAATCAAAAAAAATTTGAAGAAATATATATTCAATATGAAAAAAAC 3853 Query 120399 ACATCTATAAAGAAAAAGAAAGTCAACGCACAAGATTTGTTTATGTCAATCTTAAAAGAA 120458 | | |||| ||||| | ||| || ||| |||||| ||| | || | | ||| Sbjct 3854 AAAAAGATAAGAAAAAAAACAGTTAAAGCATTAGATTTATTTTCATTGATTATGCAGGAA 3913 Query 120459 AGAGCAGAAACAGGTCGTATCTATATTATGAACATTGACCATGTTAATACTCATTCATCT 120518 ||| || || || ||||| ||||| || | || ||| |||| | ||| || Sbjct 3914 AGAACATCTACTGGACGTATTTATATACAAAATGTAGATCATTGTAATTCACATAGTTCA 3973 Query 120519 TTTAAAGATAAAGTA----------AACATGTCTAATCTATGCCAAGAGATTACATTACC 120568 ||||| | || || |||| |||||| ||||| || ||||||||||| Sbjct 3974 TTTAATCCTGAATTATCTCCAATAAAACAA-TCTAATTTATGCTTGGAAATTACATTACC 4032 Query 120569 AACAGAACCTATTAGTCACATTGACGGT---GAAGGTGAGATTGCATTGTGTATTCTATC 120625 ||| || | | | | | ||| | | | || || || || ||| | |||| |||| Sbjct 4033 AACTAAAGCGCTAAATAATATTTATGATACAGACGGAGAAATAGCACTTTGTACATTATC 4092 Query 120626 TGCTATCAATATGGGTGCAATTAATGATAAAGAAGAATTAGAAAACCTTTGTGATTTATC 120685 ||| | ||| | || | ||||| || |||||||| || | | | | ||||| Sbjct 4093 AGCTTTTAATTTAGGAACTATTAAAAATCTTGAAGAATTTAAAGAATTATCTATATTATC 4152 Query 120686 TGTAAGAGGACTAGAAGAAATAATTGACCATCAAAATTATCCTGTTATAGCGGCAGAAAA 120745 |||| | | |||||| |||||| | || ||||||||||||| | |||| || |||| Sbjct 4153 TGTACGTGCACTAGATGAAATATTGGAATATCAAAATTATCCGATATTAGCAGCTAAAAA 4212 Query 120746 AAGTACAAAAGCAAGGCGTTCACTAGGTATTGGTTATATTGGTCTTGCTCATTTCTTAGC 120805 | | | | || ||||| ||||| |||||| ||| | | || ||| ||||| Sbjct 4213 ATCAGCCATTTCTAGACGTTCTCTAGGAATTGGTGTAATTAATTTCGCATATTATTTAGC 4272 Query 120806 AAAGAACAAGGTTTCTTACGCCTCAAAAGAAGCCTGGAAGTTGGTGGAC---GAGTTTAC 120862 || || || || ||| | | | | || | || | || | || | Sbjct 4273 TAAAAATAAAGTACGTTATTC--CGATGGGAGTGCGAAAAATTTAACACATAAAACTTTC 4330 Query 120863 TGAGGCATTTCAATACTATCTACTCAAAGCTTCCAATGAGATTGCAAAAGAAAAAGGACC 120922 || ||| | ||||| ||| | | |||| || ||| | || |||||||||||| | Sbjct 4331 -GAAGCAATGCAATATTATTTGTTAGAAGCATCTTGTGAATTAGCCAAAGAAAAAGGAGC 4389 Query 120923 ATGTGAATACTTTAGTAGAACAAAATACTCAGATGGTATATTACCAATTGACACTTATAA 120982 ||| | |||| | || || |||| || | |||||| || || || ||||| Sbjct 4390 ATGCTCTTTATTTAATCATACTAATTACTATTTAGGAAAATTACCTATAGATACATATAA 4449 Query 120983 AAAAGATGTTGATAATATAGTTAAAAGAAAACTATCTTACAATTGGGAAAAGTTAAGAAA 121042 ||||||| ||||| ||||| | | | ||| || ||||| | ||| | Sbjct 4450 AAAAGATATTGATGATATATGTGATGAACCACTGCATTTAGATTGGAATTTATTACGTTG 4509 Query 121043 AGAAATACAAGAACATGGTTTAAGACATAGTACATTGTCAGCACAAATGCCAAGTGAAAG 121102 |||| || || ||||||||||| || ||||| || || |||||| |||| Sbjct 4510 TAAAATTAAAAAATATGGTTTAAGAAATTCAACATTATCTGCTTTAATGCCTTCAGAAAC 4569 Query 121103 TTCAAGTGTTGTATCAAATGAAACAAATGGTATTGAACCACCAAGAGATT 121152 || | |||| |||| |||||||||||||||||||||||||| || Sbjct 4570 GTCTTCTCAAATATCTAATGCAACAAATGGTATTGAACCACCAAGAGGTT 4619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466020722366400