Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq64520 450 4e-122 seq836247 149 2e-31 seq147675 138 3e-28 seq533404 134 4e-27 seq81374 114 4e-21 seq59682 95.1 4e-15 seq348021 91.5 4e-14 seq10361 86.0 2e-12 >seq64520 Length=3547 Score = 450 bits (498), Expect = 4e-122 Identities = 579/794 (73%), Gaps = 6/794 (1%) Strand=Plus/Plus Query 18027 ACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATACTGG 18086 || ||||||||||| | ||||||||||| | | ||||| || |||||||| ||| Sbjct 16 ACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGG 75 Query 18087 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGG 18146 ||||| | || ||||| || |||||||| || || |||||||| || ||||||||||| Sbjct 76 AAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCTTCTTGA 135 Query 18147 CCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAATAAGTGAGGAA 18206 || ||| | || || | || ||| ||| || || ||||| || || | || Sbjct 136 CCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAG 195 Query 18207 GTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCG 18266 || || | | || ||||||||| |||| | || |||||||| || || || || Sbjct 196 GTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACGCCT 255 Query 18267 AGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTG 18326 ||||| || || || ||||||||||| ||||| || || |||||||| | |||||| ||| Sbjct 256 AGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 315 Query 18327 AAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAA 18386 |||||||| ||| || ||||||||||||||||| || || ||||| |||| || || Sbjct 316 AAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAG 375 Query 18387 A-CGAGAAATACTGAGAAG--GCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCAC 18443 | | ||||| || || || |||||||| || || || ||||| |||||| |||||| Sbjct 376 ATCAAGAAA-AC--AGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAA 432 Query 18444 GGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCG 18503 || |||||||| || | ||||||| ||||| | || ||||||||| || | || Sbjct 433 GGTCGCATACCCAGACGGAAACTAAGCTCCCACTCACGACCCATGTAACAAGCTACACCA 492 Query 18504 ATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGG 18563 | | ||||| | ||||| |||| ||| || || || || |||||||| || || | | Sbjct 493 AGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCATTCATCAACG 552 Query 18564 GTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATT 18623 | ||| |||||||| |||||||| || || | ||| || || ||| | || | || Sbjct 553 GATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATG 612 Query 18624 GCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCA 18683 || ||||| || || ||||||||||| |||| | ||| || ||||| |||||||||||| Sbjct 613 GCACCTGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCA 672 Query 18684 TCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAA 18743 || || || || ||||||||||||| || || || | |||| | | || |||||| || Sbjct 673 TCAATATCCACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAGTTGCGGTCAAT 732 Query 18744 AGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTA 18803 | | ||||||||| | || |||||||| || | ||| || ||||| | || || || Sbjct 733 AAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTT 792 Query 18804 ACCCAGTCACATAA 18817 | ||||| ||| || Sbjct 793 ATCCAGTTACAGAA 806 >seq836247 Length=317 Score = 149 bits (164), Expect = 2e-31 Identities = 210/295 (71%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 18067 TGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATAT 18126 |||| || |||||||| |||||||| | || ||||| || |||||||| || || |||| Sbjct 297 TGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATAT 238 Query 18127 TATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCG 18186 |||| || ||||||||||| | ||| | || || | || ||| | | || || | Sbjct 237 TATAAGTTTCTTCTTCTTGACTGAATATGTAACCTTCATTAGCAGATTTATTTTCTGTGG 178 Query 18187 TTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCAC 18246 |||| || || | || || || | | || ||||||||| |||| | || Sbjct 177 TTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGT 118 Query 18247 CGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTT 18306 | ||||| | || | ||||| || || || ||||||||||| ||||| || || | Sbjct 117 CAAATACAATAGTTACGCATAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCT 58 Query 18307 GGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGA 18361 ||||||| | |||||| ||||||||||| ||| | ||||||||||||||||| Sbjct 57 GGAATACAATCATGAAGTTGAAAGTACCATAAATTCTTAGAGGCATACCATCAGA 3 >seq147675 Length=2096 Score = 138 bits (152), Expect = 3e-28 Identities = 163/218 (75%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 18276 AACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCG 18335 || || ||||||||||| ||||| || || |||||||| | |||||| ||||||||||| Sbjct 1293 AATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCA 1352 Query 18336 CTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAA-AAGGATAAACGAGAAA 18394 ||| || ||||||||||||||||| || || ||||| |||| ||| | | ||||| Sbjct 1353 GAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTAGGTAGATCAAGAAA 1412 Query 18395 TACTGAGAAG--GCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATA 18452 || || ||||||| || || || ||||| |||||| | |||| || |||||| Sbjct 1413 ---ATAGCAGTCGCAGCTGTAACAGGAGCTGAATATGCAACAACAGTCCAAGGTCGCATA 1469 Query 18453 CCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTA 18490 ||||| ||||||| ||||| | || ||||| || Sbjct 1470 CCTAGATGGAAACTAAGCTCCCACTCACGACCCATATA 1507 >seq533404 Length=557 Score = 134 bits (148), Expect = 4e-27 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 17828 GATTGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCC 17887 ||| | |||||| ||||| ||||| |||||||||||||| || ||||||||||| | || Sbjct 309 GATAGCAGCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACC 368 Query 17888 AAGGTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTAC 17947 ||||||||| | ||| | | |||||||| ||| | || | ||| | | || Sbjct 369 AAGGTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAAC 428 Query 17948 AATGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGA 18007 | ||||||||||| ||||| ||||| || || |||||||||||| ||| || | || Sbjct 429 TACCGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGC 488 Query 18008 GGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTA 18054 || | ||| || | || ||||||||||| | |||||||| || Sbjct 489 AGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATTTA 535 >seq81374 Length=3119 Score = 114 bits (126), Expect = 4e-21 Identities = 89/106 (84%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 18273 TGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTA 18332 || || |||||||||||||| |||||||||||||||||||| | |||||| ||||||||| Sbjct 508 TGCAATGGATGCATAAGGATGTTGTGTTCGGCTTGGAATACAATCATGAAGTTGAAAGTA 567 Query 18333 CCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAA 18378 || ||| | ||||||||||||| ||| || || ||||| |||| Sbjct 568 CCAAAAATTCATAGAGGCATACCATTAGAAAAGCTTCCTTGACCAA 613 >seq59682 Length=3695 Score = 95.1 bits (104), Expect = 4e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 18539 TCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACC 18598 ||| || | |||||| || || | || ||| ||||||| |||||||| || || | ||| Sbjct 592 TCCATTGTGTAACCATTCATCAACGGATGCTACTTCCCATATTGGGTAAAAATGCAAACC 533 Query 18599 GATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGC 18658 || || ||| | || | || | ||| || || ||||||||||| |||| | Sbjct 532 TATAGCTGCAGAAGTAGGAATAATGTCACCTCGAATAATATTGTTTCCATAAAGTAGAGA 473 Query 18659 TCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAAT 18718 ||| || |||| |||||||||| ||| || || | ||||||||||||| || | || Sbjct 472 TCCAGAAACAGATTCACGAATACGATCAATATCCAATGGAGGAGCAGCAATGAAGTCGAT 413 Query 18719 CAAAAATGCTGT 18730 | |||| |||| Sbjct 412 AATAAATACTGT 401 >seq348021 Length=939 Score = 91.5 bits (100), Expect = 4e-14 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 18066 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATA 18125 ||||| || |||||||| |||||||| | || ||||| || |||||||| || || ||| Sbjct 937 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATA 878 Query 18126 TTATACGTCTCTTCTTCTTGGCCAAATTTATATCC 18160 ||||| || ||||||||||| || ||| |||| || Sbjct 877 TTATAAGTTTCTTCTTCTTGACCGAATCTATAACC 843 >seq10361 Length=7172 Score = 86.0 bits (94), Expect = 2e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 17828 GATTGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCC 17887 ||| | |||||| ||||| ||||| |||||||||||||| || ||||||||||| | || Sbjct 222 GATAGCAGCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCGATACC 281 Query 17888 AAGGTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTAC 17947 ||||||||| || | | ||||||| ||| | || || ||| | | || Sbjct 282 AAGGTTAGCAAAATTAATGATTCCAGCCCAAGTACTAATTACATGACCTTGACTATCAAC 341 Query 17948 AATGGATTGGTTGAAGTTGAATCCATTGAG 17977 | ||||||||||| ||||| ||||| || Sbjct 342 TACCGATTGGTTGAAATTGAAACCATTTAG 371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149744112684340