Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq64520 412 1e-110 seq147675 147 6e-31 seq836247 136 1e-27 seq533404 134 4e-27 seq348021 86.0 2e-12 seq81374 82.4 2e-11 >seq64520 Length=3547 Score = 412 bits (456), Expect = 1e-110 Identities = 561/780 (72%), Gaps = 2/780 (0%) Strand=Plus/Plus Query 21648 AACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTA 21707 ||||| |||||||| |||||||| ||||| || |||||||| | | ||| || || || Sbjct 1 AACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTG 60 Query 21708 AAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAA 21767 || ||||||||||||||||| | || |||||||| || ||||| || || ||||| ||| Sbjct 61 AAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAA 120 Query 21768 GTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCA 21827 || ||||| |||||||| || ||||||| | || || | | ||| || || || Sbjct 121 GTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCC 180 Query 21828 CGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAAT 21887 | || | || || |||| ||| ||||||||| || | || || ||| Sbjct 181 CTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAAT 240 Query 21888 ACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAAC 21947 || || || || || ||||||||||| || |||||||| || ||||||||||||||||| Sbjct 241 ACACCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAAT 300 Query 21948 ACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCC 22007 || | |||| ||||||| || || || || || | |||||| |||||||||| || Sbjct 301 ACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCT 360 Query 22008 TGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCA 22067 || |||| || || | | ||| |||||||||||||| || |||||||| || || ||| Sbjct 361 TGACCAATTGGGTAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCA 420 Query 22068 ACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAA 22127 ||| ||||| || | ||| || || || | ||||| |||||||| || ||||||||| Sbjct 421 ACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGCTCCCACTCACGACCCATGTAA 480 Query 22128 GCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGC 22187 | || |||| | |||||| | || | |||| | ||||| || ||||| | | Sbjct 481 CAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAAC 540 Query 22188 CATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTG 22247 |||||||||| | || |||||||| |||||||| || || | || || || | Sbjct 541 CATTCATCAACGGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCAGAA 600 Query 22248 CTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGT 22307 | |||| | ||| ||||| || || ||||| ||||| | || || |||| || ||| Sbjct 601 GTAGGAATAATGGCACCTGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGT 660 Query 22308 TCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTT 22367 || || || ||||| || || || || || || ||| |||||||||||||| || Sbjct 661 TCACGAATACCATCAATATCCACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAA 720 Query 22368 GTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426 || |||| ||| ||| | || ||||| | || || |||||||| | ||||||||||| Sbjct 721 GTTGCGGTCAATAAGGTA-GGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 779 >seq147675 Length=2096 Score = 147 bits (162), Expect = 6e-31 Identities = 167/223 (75%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 21905 CATGTGAAAA-GGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGA 21963 ||||| |||| || |||||||| || ||||||||||||||||| || | |||| |||||| Sbjct 1285 CATGTAAAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGA 1344 Query 21964 AGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAA 22023 | || || || || || | |||||| |||||||||| || || |||| | || | Sbjct 1345 AAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTAGGTAGA 1404 Query 22024 CAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCC 22083 | ||| | |||||||||||| | |||||||| || || ||||||| |||| || | Sbjct 1405 TCAAGAAAATAGCAGTCGCAGCTGTAACAGGAGCTGAATATGCAACAACAGTCCAAGGTC 1464 Query 22084 TCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTA 22126 ||| ||||| | | ||||| |||||||| || ||||| || Sbjct 1465 GCATACCTAGATGGAAACTAAGCTCCCACTCACGACCCATATA 1507 >seq836247 Length=317 Score = 136 bits (150), Expect = 1e-27 Identities = 207/295 (70%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 21705 TTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTG 21764 || || ||||||||||||||||| | || |||||||| || ||||| || || ||||| Sbjct 295 TTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTA 236 Query 21765 TAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTC 21824 ||||| ||||| ||||||| || ||||||| | || || | ||| || || Sbjct 235 TAAGTTTCTTCTTCTTGACTGAATATGTAACCTTCATTAGCAGATTTATTTTCTGTGGTT 176 Query 21825 TCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCA 21884 || | || | || || |||| ||| ||||||||| || | || || Sbjct 175 TCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGTCA 116 Query 21885 AATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGG 21944 ||||| | || | ||||||||||| || |||||||| || ||||||||||||||| Sbjct 115 AATACAATAGTTACGCATAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGG 56 Query 21945 AACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAA 21999 || || | |||| ||||||| || || | || | | |||||| ||||||||| Sbjct 55 AATACAATCATGAAGTTGAAAGTACCATAAATTCTTAGAGGCATACCATCAGAAA 1 >seq533404 Length=557 Score = 134 bits (148), Expect = 4e-27 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 21476 GTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACG 21535 ||| || ||||| || || || || || |||||||| || || | |||||||| ||||| Sbjct 321 GTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACG 380 Query 21536 GTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTT 21595 ||||| || |||||||| || || || || | || | | | | | | |||||||| Sbjct 381 GTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACCGATTGGTT 440 Query 21596 AAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAAT 21655 || ||||||||||| | |||||||||||| || | || | |||| ||||| || Sbjct 441 GAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGAT 500 Query 21656 ACCTACAACAGGCCAGGCAGCAAGAAAGAAAT 21687 |||||| |||||||| ||||| || ||||||| Sbjct 501 ACCTACTACAGGCCAAGCAGCTAGGAAGAAAT 532 >seq348021 Length=939 Score = 86.0 bits (94), Expect = 2e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 21702 TTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATA 21761 || || || ||||||||||||||||| | || |||||||| || ||||| || || ||| Sbjct 937 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATA 878 Query 21762 TTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACC 21796 || ||||| ||||| |||||||| || | ||||| Sbjct 877 TTATAAGTTTCTTCTTCTTGACCGAATCTATAACC 843 >seq81374 Length=3119 Score = 82.4 bits (90), Expect = 2e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 21909 TGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTG 21968 || || ||||||||||| || ||||| || || ||||| || | |||| ||||||| || Sbjct 508 TGCAATGGATGCATAAGGATGTTGTGTTCGGCTTGGAATACAATCATGAAGTTGAAAGTA 567 Query 21969 CCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGG 22028 || | || | | |||||| ||| |||||| || || |||| || || | | | Sbjct 568 CCAAAAATTCATAGAGGCATACCATTAGAAAAGCTTCCTTGACCAATTGGGTAGATTAAG 627 Query 22029 AACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAA 22071 || ||| ||||||| | || | ||||| || || ||||||| Sbjct 628 AAAACAATAGTCGCAACTGCAATAGGAGTTGAATATGCAACAA 670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144686880295800