Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq6274 129 3e-25 >seq6274 Length=8207 Score = 129 bits (142), Expect = 3e-25 Identities = 214/304 (70%), Gaps = 4/304 (1%) Strand=Plus/Plus Query 25982 ATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAA-TCAAAAATATCTGAGTGCCA 26040 ||| || | ||||| || || || | | ||| |||||| ||||| ||||| | ||||| Sbjct 4796 ATTGCTACCTTTCCATGGTTTTTCCTCAAATC-AAGAAACTCAAAGATATCAGCATGCCA 4854 Query 26041 TGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCT 26100 |||||| ||||| | |||||| ||| |||||||| || || ||||| || || |||| Sbjct 4855 TGGTTCCAAATAAACAGCAAATGCACCCTTTCTTTTACCACCTCCTTGGTCAACATATCG 4914 Query 26101 TGCAGTTTCATTGAAAACTTTCAACATTGGAACTAAT-CCAGTTGAAAATCCGTTTGTGC 26159 ||||| ||||| || || ||||||||||| |||| ||| | || ||| ||||||| Sbjct 4915 AGCAGTGTCATTAAACACACGCAACATTGGAA-TAATACCATTAGATGTTCCATTTGTGC 4973 Query 26160 TATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCC 26219 | | || | ||| || | ||| |||| || || | ||| || || || || Sbjct 4974 CACGTATGTAACTTCCAGTTGCTCTGATATTATGCACAGAGACACCAATACCCCCTGCTG 5033 Query 26220 ATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTT 26279 |||| ||| | ||||| ||| | ||||| | || |||| ||||||||| ||| Sbjct 5034 ATTTGCTGATAACAGCACATTCTTTTAAAGTATCATAGATGCCTTCAATGCTATCATCTT 5093 Query 26280 TCAT 26283 |||| Sbjct 5094 TCAT 5097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 250338142468250