Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq48246 107 2e-18 seq1209 102 1e-16 seq6274 95.1 1e-14 seq108547 89.7 6e-13 seq107321 87.8 2e-12 seq17013 84.2 3e-11 >seq48246 Length=4099 Score = 107 bits (118), Expect = 2e-18 Identities = 166/236 (70%), Gaps = 7/236 (3%) Strand=Plus/Minus Query 64995 AGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGA 65054 ||| ||| | ||| | || ||| |||||||||| ||||| ||||| | |||||| | || Sbjct 1810 AGCAATCGAGACTATTCCGTGTGTTGAGAAGAAAGCGAATTGGGCTCTCAAATGGATCGA 1751 Query 65055 CACAAAGTCTCGCT--CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATC 65112 | |||| | || || ||||| || | || || || || || || || || Sbjct 1750 T-----GGCTCGGAGACGTTTGCAGAGCGTATTATCGCTTTCGCTTGCGTTGAAGGGATT 1696 Query 65113 TTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGC 65172 ||||| ||||| |||||||| |||| |||||||||||| || || | ||||| || Sbjct 1695 TTCTTTTCCGGAAGCTTCTGCGCGATTTTTTGGTTGAAGAAACGTGGGTTGATGCCTGGA 1636 Query 65173 CTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || |||||| || ||| | || || ||||||||||| | ||| || ||||| Sbjct 1635 TTAACCTTCTCGAACGAATTAATCTCGCGAGATGAGGGATTACACTGTGATTTTGC 1580 >seq1209 Length=11671 Score = 102 bits (112), Expect = 1e-16 Identities = 176/254 (69%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||| ||||||||||||||||| || || || || | ||| | ||| ||| || Sbjct 2367 TTTGTTGAGATGTTTGTTGGTGTTGGGGCTTCGAGAGTGAGGGATTTGTTTAAAAAGGCA 2426 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || |||||||| || |||||||||||||||| || || | ||| | Sbjct 2427 AAAGAGAATGCTCCGTGTATTGTGTTTGTTGATGAGATTGATGCAGTTGGGAGACAAAGA 2486 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | |||| | | | | | ||||| || || ||||| ||| | ||||| || | | Sbjct 2487 GGAACTGGAATTGGAGG--TGGGAATGATGAAAGGGAACAGACATTGAATCAGCTTTTGA 2544 Query 175574 CCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCG 175633 | || |||||||| ||||| | || || ||| | ||| |||| || |||||||| | Sbjct 2545 CTGAAATGGATGGATTTGAAGGGAATACGGGTATTATTGTTGTTGCAGCTACTAATCGTG 2604 Query 175634 TGGATATCCTTGAT 175647 ||||| |||||| Sbjct 2605 CTGATATTCTTGAT 2618 >seq6274 Length=8207 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/158 (73%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 75497 ATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCC 75556 || || || |||||||| ||| ||||||||||||||||| | || || ||||| | | Sbjct 4980 ATACGTGGCACAAATGGAACATCTAATGGTATTATTCCAATGTTGCGTGTGTTTAATGAC 4921 Query 75557 ACAGCGCGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTG 75613 || || || ||||| | |||| || || | ||||| | | || || || ||| Sbjct 4920 ACTGCTCGATATGTTGACCAAGGAGGTGGTAAAAGAAAGGGTGCATTTGCTGTTTATTTG 4861 Query 75614 GAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTT 75651 |||||||||||||| |||||| | ||||| ||||| || Sbjct 4860 GAACCATGGCATGCTGATATCTTTGAGTTTCTTGATTT 4823 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 75187 ||||||| ||| | || ||| ||||| ||||||||||||| | | ||||| | | Sbjct 5436 CGGGACTTTGACTATGATTATTTTGGATTCAAAACCCTTGAAAGGTCTTATCTCTTAAAG 5377 Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 | || || | | |||||| || || | ||| | ||| | || ||| | || || Sbjct 5376 ATAGAAGGAAATGTTGTGGAAAGGCCTCAACATATGCTGATGAGAGTTGCAGTTGGGATT 5317 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTT 75306 || ||||||||||||||||| | | ||||| | ||||| || |||| ||| Sbjct 5316 CATAAAGAAGACATTGATTCTGTAATCAAAACATATCATTTAATGTCACAGAGGTG-GTT 5258 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || ||| || | || ||||| ||||||||||| ||||| || || || Sbjct 5257 CACTCATGCTTCTCCCACCCTTTTCAATGCTGGAACACCCAGGCCTCA 5210 Score = 82.4 bits (90), Expect = 9e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 76128 TTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGC 76187 ||||||| | |||||| ||| | ||||||| ||| | || || ||||| ||||| Sbjct 3666 TTGTTACAATAAATCTCAACAAAATCATTGATGTAAACTACTACCCTGTTGAAACTGCAA 3607 Query 76188 GAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTAT 76247 || ||| || | ||||||| ||||||||| | || ||||||||||| || ||| | Sbjct 3606 AAAGGTCAAACTTAAGACACAGGCCTATTGGTATTGGGGTTCAAGGTCTTGCAGATACTT 3547 Query 76248 TTATTTTG 76255 |||||||| Sbjct 3546 TTATTTTG 3539 >seq108547 Length=2609 Score = 89.7 bits (98), Expect = 6e-13 Identities = 201/295 (68%), Gaps = 13/295 (4%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||| || ||||||||||| || ||||| ||| || || ||| | |||||| | Sbjct 1205 TTTGTTGAAATGTTTGTTGGAGTAGGTGCTTCAAGAGTACGAGATATGTTTGAA--CATT 1148 Query 175456 CGCGAAAATC--AACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAAC 175513 | ||||||| ||||||||| | || ||||| || |||||||| || || ||| Sbjct 1147 CAAGAAAATCTGCACCATGTATAATTTTTATTGACGAAATTGATGCTGTAGGACGTCAAA 1088 Query 175514 GCAGCGCTGGTGGTATG-CCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTC 175572 | || |||| || | || | |||| || |||||||||||| |||| ||| | | Sbjct 1087 GGGGCACTGG-ATTAGGTGGAGGACATGATGAAAGAGAACAAACACTTAACCAAATGTTA 1029 Query 175573 ACCGAGATGGATGGCTTTGA---CAATGAGACTGGCATTGTGGTTATTGCGGCCACTAAT 175629 || |||||||| ||||| |||||| || || | | ||||| || |||||| Sbjct 1028 GTAGAAATGGATGGTTTTGATGGGAATGAG---GGTATCATCTTGATTGCTGCTACTAAT 972 Query 175630 CGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCG-CAAG 175683 | ||| | | ||| || || | || || |||||||||||||| |||| Sbjct 971 AGGCCTGATGTTTTAGATCCAGCTCTTTTACGTCCTGGTCGTTTTGATCGTCAAG 917 >seq107321 Length=2628 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/197 (70%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGC 65080 ||||||| || |||||||| | | |||| | || | ||| ||||||| || | Sbjct 1087 AGAAGAAAGCTAAATGGGCCCTCAGATGGATCGATGGA---TCTGAAACCTTCGCAGAAC 1143 Query 65081 GCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTT 65140 | | | || || || || || || ||||||||||||||||| |||||||| || | Sbjct 1144 GGATCATCGCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCGGCAGTTTCTGCGCCATAT 1203 Query 65141 ATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCC 65200 ||| | || || || || || |||||||| ||| ||||| || ||| | || || | Sbjct 1204 TCTGGCTCAAAAAACGAGGGCTTATGCCAGGGCTAACATTCTCGAACGAATTGATCTCGC 1263 Query 65201 GAGATGAGGGTCTCCAC 65217 |||| |||||| | ||| Sbjct 1264 GAGACGAGGGTTTGCAC 1280 >seq17013 Length=6145 Score = 84.2 bits (92), Expect = 3e-11 Identities = 184/276 (67%), Gaps = 0/276 (0%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || || |||||||| | || | || | || || ||| | ||| ||||| Sbjct 1138 CCAGGAACCGGGAAGACCCTTTTGGCTAGGGCGGTGGCCGGAGAAGCTGGTGTGCCATTT 1197 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || || |||| || | || || ||| | ||||| ||||| ||||| || ||| Sbjct 1198 TTCTCATGTGCTGCATCAGAATTCGTTGAGTTATTTGTGGGTGTTGGTGCATCTAGAGTT 1257 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 | ||| | ||||||| || ||| ||| || ||||| ||||||||||| || Sbjct 1258 AGGGATTTGTTTGAAAAGGCGAAATCAAAAGCACCTTGCATTGTGTTCATTGATGAAATA 1317 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAA 175554 ||||| || || | ||| | | || ||| | | ||||| || || |||||| Sbjct 1318 GATGCAGTCGGAAGACAAAGAGGTGCAGGTCTTGGTGGTGGGAATGATGAAAGGGAACAA 1377 Query 175555 ACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 || ||||||||| | | || || |||||||| ||| Sbjct 1378 ACTATTAATCAATTGTTGACAGAAATGGATGGTTTT 1413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590036342596800