Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq64520 423 2e-113 seq836247 196 6e-45 seq147675 131 2e-25 seq533404 127 2e-24 seq81374 109 7e-19 seq71880 95.1 1e-14 seq348021 91.5 2e-13 >seq64520 Length=3547 Score = 423 bits (468), Expect = 2e-113 Identities = 574/798 (72%), Gaps = 2/798 (0%) Strand=Plus/Plus Query 8068 AACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT- 8126 ||||| | || ||| || || | | ||| |||||||| || | | | | |||||| Sbjct 1 AACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTG 60 Query 8127 AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATA 8186 |||| | ||||| |||||||| |||| ||||| || |||||||| || || |||||||| Sbjct 61 AAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATA 119 Query 8187 GGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTC 8246 || |||||||||||||| || | ||||| | || ||| || | ||| || || || Sbjct 120 AGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 179 Query 8247 TCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAA 8306 ||||| | | ||| || || |||||||| ||||||||||| || || || || ||||| Sbjct 180 CCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAA 239 Query 8307 CATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAA 8366 | ||| ||||| ||| ||| || || || |||||||| ||||| ||||| || ||||| Sbjct 240 TACACCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 299 Query 8367 TACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACC 8426 ||| | ||||||||| || ||||||||||| ||||||||||| |||||||| || || Sbjct 300 TACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCC 359 Query 8427 CTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGC 8486 ||||||| ||| || | ||||| || || ||||| | || ||||| |||||| Sbjct 360 TTGACCAATTGGGTAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGC 419 Query 8487 TACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTA 8546 ||| ||||| |||| |||||| | ||| | | |||||||| | ||||||||| Sbjct 420 AACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGCTCCCACTCACGACCCATGTA 479 Query 8547 AGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAA 8606 | || | |||| | |||||| | | || | | ||| ||||| || || || || Sbjct 480 ACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAA 539 Query 8607 CCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGA 8666 ||| ||||| | | || |||||||| || || || || || || || ||||| || Sbjct 540 CCATTCATCAACGGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCAGA 599 Query 8667 AGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGG 8726 || |||| | ||||| || || || ||||||||||| | | || || | |||||| Sbjct 600 AGTAGGAATAATGGCACCTGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGG 659 Query 8727 TTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGT 8786 |||||||||||| || ||||| || || ||||||||||| || || | ||||| || Sbjct 660 TTCACGAATACCATCAATATCCACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGA 719 Query 8787 AGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTT 8846 || || | || ||| ||| ||||| | ||| |||||||| || | ||||| | ||| Sbjct 720 AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 779 Query 8847 GTTTGTACTTGTAACCCA 8864 | || || || | ||| Sbjct 780 TTCGGTGCTGGTTATCCA 797 >seq836247 Length=317 Score = 196 bits (216), Expect = 6e-45 Identities = 224/299 (75%), Gaps = 3/299 (1%) Strand=Plus/Minus Query 8119 CTGTTGTTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACA 8178 |||||| |||| | ||||| |||||||| |||| ||||| || |||||||| || || Sbjct 298 CTGTTG--AAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACG 242 Query 8179 ATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCA 8238 |||||||| || ||||||||||||| || | ||||| | || ||| | | ||| Sbjct 241 ATATTATAAGTTTCTTCTTCTTGACTGAATATGTAACCTTCATTAGCAGATTTATTTTCT 182 Query 8239 GTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGAT 8298 || || || ||||| | | ||| || || |||||||| ||||||||||| || || || Sbjct 181 GTGGTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAG 122 Query 8299 CCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCT 8358 || | || | | | ||| | | ||| || || || |||||||| ||||| ||||| Sbjct 121 CCGTCAAATACAATAGTTACGCATAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 62 Query 8359 GCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGA 8417 || |||||||| | ||||||||| || |||||| |||| | ||||||||| |||||||| Sbjct 61 GCCTGGAATACAATCATGAAGTTGAAAGTACCATAAATTCTTAGAGGCATACCATCAGA 3 >seq147675 Length=2096 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 8332 AAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCA 8391 || || |||||||| ||||| ||||| || |||||||| | ||||||||| || |||||| Sbjct 1293 AATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCA 1352 Query 8392 GAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAAC 8451 ||||| ||||||||||| |||||||| || || ||||||| | | || | ||||| Sbjct 1353 GAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTAGGTAGATCAAGAAA 1412 Query 8452 ACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTAC-ACAGATCCATGGTCTCATACC 8510 | || ||||| | || ||||| |||||| || |||| |||| |||| |||||| Sbjct 1413 ATAGCAGTCGCAGCTGTAACAGGAGCTGAATATGCAACAACAG-TCCAAGGTCGCATACC 1471 Query 8511 TAAGCGGTATGATAACTCCCACTGTCTACCCATGTA 8546 || || | | |||||||| | |||||| || Sbjct 1472 TAGATGGAAACTAAGCTCCCACTCACGACCCATATA 1507 >seq533404 Length=557 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||||||||| ||||| || || ||||| | ||||||||||||||||||||| | ||| Sbjct 316 GCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 375 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| ||| ||| | || | | |||||| || ||| Sbjct 376 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACCGAT 435 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || || || || ||||| || ||||| |||| ||||| | || ||| ||| Sbjct 436 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 495 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAA 8105 || | || ||| || || | | ||| |||||||| Sbjct 496 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAA 530 >seq81374 Length=3119 Score = 109 bits (120), Expect = 7e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 8329 TGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTA 8388 || || ||||||||||| ||||| || || ||||||||||| | ||||||||| || ||| Sbjct 508 TGCAATGGATGCATAAGGATGTTGTGTTCGGCTTGGAATACAATCATGAAGTTGAAAGTA 567 Query 8389 CCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAG 8448 ||| |||| | ||||||||| |||| ||| || || ||||||| ||| || | |||| Sbjct 568 CCAAAAATTCATAGAGGCATACCATTAGAAAAGCTTCCTTGACCAATTGGGTAGATTAAG 627 Query 8449 AACAC 8453 || || Sbjct 628 AAAAC 632 >seq71880 Length=3346 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 8249 TGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACA 8308 |||||| | ||| | || |||||||| |||||| || || || || | ||||| | Sbjct 1733 TGATTAAACTAGAAATGACCAAAGAACCATGCATAATGCTAAATAGGGAGCTTCCGAATA 1674 Query 8309 TACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATA 8368 ||| ||| ||| ||| | || || |||||||| ||||| ||||| || |||||| Sbjct 1673 CACCAACTATGCCTAGCATTCGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATG 1614 Query 8369 CGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCAT 8408 | | | ||||||| || | |||| |||| ||||||||||| Sbjct 1613 CAATCGTGAAGTTGAAAGCACCAAAAATTCCTAGAGGCAT 1574 >seq348021 Length=939 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/97 (82%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 8121 GTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAA 8179 |||||| |||| | ||||| |||||||| |||| ||||| || |||||||| || || | Sbjct 938 GTTGTTGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGA 880 Query 8180 TATTATAGGTCTCTTCTTCTTGACCAAACTTATAACC 8216 ||||||| || |||||||||||||| || ||||||| Sbjct 879 TATTATAAGTTTCTTCTTCTTGACCGAATCTATAACC 843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 609117859909200