Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq64520 412 1e-110 seq147675 147 6e-31 seq836247 136 1e-27 seq533404 134 4e-27 seq348021 86.0 2e-12 seq81374 82.4 2e-11 >seq64520 Length=3547 Score = 412 bits (456), Expect = 1e-110 Identities = 561/780 (72%), Gaps = 2/780 (0%) Strand=Plus/Minus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 ||||||||||| | |||||||| || || | ||||| || | ||| ||| |||| || Sbjct 779 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 721 Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379 || |||||||||||||| ||| || || || || || || ||||| || || || Sbjct 720 TTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGA 661 Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAG 41439 ||| || |||| || || | ||||| ||||| || || ||||| ||| | |||| | Sbjct 660 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCAGGTGCCATTATTCCTAC 601 Query 41440 CAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATG 41499 | || || || | || || |||||||| |||||||| || | |||||||||| Sbjct 600 TTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAATG 541 Query 41500 GCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGC 41559 | | ||||| || ||||| | |||| | || | |||||| | |||| || | Sbjct 540 GTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 481 Query 41560 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGT 41619 ||||||||| || |||||||| ||||| | || || || ||| | || ||||| ||| Sbjct 480 TTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGT 421 Query 41620 TGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACA 41679 ||| || || |||||||| || |||||||||||||| ||| | | || || |||| || Sbjct 420 TGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTACCCAATTGGTCA 361 Query 41680 GGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGT 41739 || |||||||||| |||||| | || || || || || ||||||| |||| | || Sbjct 360 AGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 301 Query 41740 GTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGT 41799 ||||||||||||||||| || |||||||| || ||||||||||| || || || || || Sbjct 300 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGT 241 Query 41800 ATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCG 41859 ||| || || | || ||||||||| ||| |||| || || | || | Sbjct 240 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAG 181 Query 41860 TGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGAC 41919 || || || ||| | | || || | ||||||| || |||||||| ||||| || Sbjct 180 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAAC 121 Query 41920 TTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTT 41979 ||| ||||| || || ||||| || |||||||| || | ||||||||||||||||| || Sbjct 120 TTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 61 Query 41980 TAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTT 42039 || || || ||| | | |||||||| || ||||| |||||||| |||||||| ||||| Sbjct 60 CAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTT 1 >seq147675 Length=2096 Score = 147 bits (162), Expect = 6e-31 Identities = 167/223 (75%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 41561 TACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTT 41620 || ||||| || |||||||| ||||| | | ||||| ||| | || |||| ||||| Sbjct 1507 TATATGGGTCGTGAGTGGGAGCTTAGTTTCCATCTAGGTATGCGACCTTGGACTGTTGTT 1448 Query 41621 GCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAG 41680 || || || |||||||| | |||||||||||| | ||| | | || | |||| || Sbjct 1447 GCATATTCAGCTCCTGTTACAGCTGCGACTGCTATTTTCTTGATCTACCTAATTGGTCAA 1388 Query 41681 GGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTG 41740 || |||||||||| |||||| | || || || || || ||||||| |||| | || Sbjct 1387 GGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTA 1328 Query 41741 TTCCAGGCTGAGCACAATATTCTTATGCATCC-TTTTCACATG 41782 ||||||||||||||||| || |||||||| || |||| ||||| Sbjct 1327 TTCCAGGCTGAGCACAACATCCTTATGCACCCATTTTTACATG 1285 >seq836247 Length=317 Score = 136 bits (150), Expect = 1e-27 Identities = 207/295 (70%), Gaps = 0/295 (0%) Strand=Plus/Plus Query 41688 TTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGG 41747 ||||||||| |||||| | | || | || || ||||||| |||| | || ||||||| Sbjct 1 TTTCTGATGGTATGCCTCTAAGAATTTATGGTACTTTCAACTTCATGATTGTATTCCAGG 60 Query 41748 CTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTG 41807 |||||||||| || |||||||| || ||||||||||| | || | ||||||| | Sbjct 61 CTGAGCACAACATCCTTATGCACCCATTTCACATGCTATGCGTAACTATTGTATTTGACG 120 Query 41808 GGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGA 41867 | | || ||||||||| ||| |||| || || | || | || || | Sbjct 121 GCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCA 180 Query 41868 CTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATA 41927 | ||| | || || | ||||||| || ||||||| ||||| ||||| |||| Sbjct 181 CAGAAAATAAATCTGCTAATGAAGGTTACATATTCAGTCAAGAAGAAGAAACTTATAATA 240 Query 41928 TTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAA 41982 | || || ||||| || |||||||| || | ||||||||||||||||| || || Sbjct 241 TCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAA 295 >seq533404 Length=557 Score = 134 bits (148), Expect = 4e-27 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 42000 ATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTA 42059 ||||||| || ||||| |||||||| |||||||| ||||| |||| | || | | Sbjct 532 ATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCA 473 Query 42060 CCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGAC 42119 | |||||||||||| | ||||||||||| || |||||||| | | | | | | || | Sbjct 472 CTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCGGTAGTTGATAGTCAAGGCC 413 Query 42120 AGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGC 42179 || || || || |||||||| || |||||||||| |||||||| | || || |||| Sbjct 412 GTGTAATTAATACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGC 353 Query 42180 ATGAGCGGAACGCACACAACTTCCCGCTTGAC 42211 |||| || || || || || ||||| || ||| Sbjct 352 ATGAACGTAATGCTCATAATTTCCCTCTAGAC 321 >seq348021 Length=939 Score = 86.0 bits (94), Expect = 2e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 ||||| | || |||||||| ||||| ||||| ||||| || || ||||| || |||||| Sbjct 843 GGTTATAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTT 902 Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAATAA 41985 || || | ||||||||||||||||| || || || Sbjct 903 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAA 937 >seq81374 Length=3119 Score = 82.4 bits (90), Expect = 2e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 41616 TTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTG 41675 ||||||| || || ||||| | || | ||||||| ||| ||| | | || || ||| Sbjct 670 TTGTTGCATATTCAACTCCTATTGCAGTTGCGACTATTGTTTTCTTAATCTACCCAATTG 611 Query 41676 GACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGC 41735 | || || |||||| ||| |||||| | | || | || || ||||||| |||| Sbjct 610 GTCAAGGAAGCTTTTCTAATGGTATGCCTCTATGAATTTTTGGTACTTTCAACTTCATGA 551 Query 41736 TGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCA 41778 | || ||||| || || ||||| || ||||||||||| || || Sbjct 550 TTGTATTCCAAGCCGAACACAACATCCTTATGCATCCATTGCA 508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144693213711440