Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq64520 448 1e-121 seq836247 159 1e-34 seq533404 152 1e-32 seq147675 138 3e-28 seq81374 105 2e-18 seq10361 89.7 1e-13 seq59682 86.0 2e-12 >seq64520 Length=3547 Score = 448 bits (496), Expect = 1e-121 Identities = 595/818 (73%), Gaps = 6/818 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | || || | ||||||||||| |||| |||||| Sbjct 815 TGGGGTCGCTTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTT 756 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397 ||||| ||||||| |||| || | | | || || | ||| |||||| |||| |||| Sbjct 755 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCA 698 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 ||||||| ||||| || || |||||||| |||||||||||||| ||||| ||||| || | Sbjct 697 TTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTT 638 Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517 |||| ||||| || || || |||||| | | |||| | || || || | |||| Sbjct 637 ATGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCATT 578 Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577 | || | || |||||||| || |||| |||||| | |||||||| || |||||| Sbjct 577 TTTACCCAATATGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATG 518 Query 42578 AGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAAC 42637 | || | || | |||||| | | ||| | | |||| |||| || || ||||| | Sbjct 517 AACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGC 458 Query 42638 TTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTG 42697 || | ||| || || ||| | || ||||| |||||| || || || ||||| || | Sbjct 457 TTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAG 398 Query 42698 CAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGC 42757 | |||||||| || ||| | |||| ||| |||| ||||| ||||| ||||| |||| Sbjct 397 CTGCGACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGC 338 Query 42758 CTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTC 42817 |||| || ||||| ||||| |||||||||||| | || ||||||||||| || ||||| | Sbjct 337 CTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCC 278 Query 42818 TTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAG 42877 ||||||| || || || ||||| || || || || ||||| || || || | || | Sbjct 277 TTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTG 218 Query 42878 CTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCC 42937 ||||||||||| | | || |||||| | | | | ||||| || ||||| ||| Sbjct 217 CTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTG 158 Query 42938 AAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATG 42997 ||| | || |||| ||||||||||| || || |||||||| || || || || |||| Sbjct 157 CTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCATG 98 Query 42998 GTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCAC 43056 |||| ||||| || | |||||||||||||| | |||| || || ||| ||||| || Sbjct 97 GTTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAACTCTCGTTCTTTACAT 39 Query 43057 TTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTT 43094 ||||| || || |||||||| || || || || ||||| Sbjct 38 TTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTT 1 >seq836247 Length=317 Score = 159 bits (176), Expect = 1e-34 Identities = 207/286 (72%), Gaps = 0/286 (0%) Strand=Plus/Plus Query 42743 TTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGG 42802 |||| ||||| |||||||| | |||| ||||| |||||||||||| | || ||||||| Sbjct 1 TTTCTGATGGTATGCCTCTAAGAATTTATGGTACTTTCAACTTCATGATTGTATTCCAGG 60 Query 42803 CTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTG 42862 |||| || ||||| |||||||| || || || ||||| | || | ||||||| | Sbjct 61 CTGAGCACAACATCCTTATGCACCCATTTCACATGCTATGCGTAACTATTGTATTTGACG 120 Query 42863 GGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGA 42922 | || | || |||||||||||| | | || |||||| | | | | ||||| | Sbjct 121 GCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCA 180 Query 42923 CTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACA 42982 | ||||| || ||| | || |||| ||| ||||||| || || |||||||| | Sbjct 181 CAGAAAATAAATCTGCTAATGAAGGTTACATATTCAGTCAAGAAGAAGAAACTTATAATA 240 Query 42983 TTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGC 43028 | || || || |||||||| ||||| || | |||||||||||||| Sbjct 241 TCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 286 >seq533404 Length=557 Score = 152 bits (168), Expect = 1e-32 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 43044 TCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCT 43103 ||| ||||| | ||||| || || |||||||| || || || || ||||||||| || | Sbjct 543 TCGTTCTTTAAATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTT 484 Query 43104 TGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGA 43163 || |||| |||||||| || ||| | |||||||| || || |||||||| | ||||| Sbjct 483 AGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCGGTAGTTGA 424 Query 43164 TAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTT 43223 || ||| | ||| || ||||||||||||||| | || ||||| |||||||| | Sbjct 423 TAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTAT 364 Query 43224 TGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGA 43265 || || ||||| || || ||||| ||||| ||||| || || Sbjct 363 GGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGA 322 >seq147675 Length=2096 Score = 138 bits (152), Expect = 3e-28 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 42620 TGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTT 42679 |||| || || ||||| ||| | || || || ||| | || |||| ||||||| | Sbjct 1503 TGGGTCGTGAGTGGGAGCTTAGTTTCCATCTAGGTATGCGACCTTGGACTGTTGTTGCAT 1444 Query 42680 ACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTT 42739 | || || ||||| | || |||||||| | ||| | |||| | | |||| ||||| Sbjct 1443 ATTCAGCTCCTGTTACAGCTGCGACTGCTATTTTCTTGATCTACCTAATTGGTCAAGGAA 1384 Query 42740 CTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCC 42799 ||||| ||||| |||||||| || ||||| ||||| |||||||||||| | || |||| Sbjct 1383 GCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCC 1324 Query 42800 AGGCTGAACATAACATTCTTATGCATCCTTT 42830 ||||||| || ||||| |||||||| || || Sbjct 1323 AGGCTGAGCACAACATCCTTATGCACCCATT 1293 >seq81374 Length=3119 Score = 105 bits (116), Expect = 2e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 42671 TTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTG 42730 ||||||| || || | ||| | || | |||||| || ||| | |||| ||| ||| Sbjct 670 TTGTTGCATATTCAACTCCTATTGCAGTTGCGACTATTGTTTTCTTAATCTACCCAATTG 611 Query 42731 GGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGT 42790 | ||||| ||||| |||| |||||||| | |||| ||||| |||||||||||| Sbjct 610 GTCAAGGAAGCTTTTCTAATGGTATGCCTCTATGAATTTTTGGTACTTTCAACTTCATGA 551 Query 42791 TGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCA 42833 | || ||||| || ||||| ||||| ||||||||||| || || Sbjct 550 TTGTATTCCAAGCCGAACACAACATCCTTATGCATCCATTGCA 508 >seq10361 Length=7172 Score = 89.7 bits (98), Expect = 1e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 43132 AATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGG 43191 |||||||| || || |||||||| | ||||||| ||| |||||| || ||||||| Sbjct 368 AATGGTTTCAATTTCAACCAATCGGTAGTTGATAGTCAAGGTCATGTAATTAGTACTTGG 309 Query 43192 GCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACAT 43251 |||| || | ||| ||| |||||||| | || || ||||| || || ||||| ||| Sbjct 308 GCTGGAATCATTAATTTTGCTAACCTTGGTATCGAAGTTATGCATGAACGTAATGCTCAT 249 Query 43252 AACTTCCCGCTTGA 43265 || ||||| || || Sbjct 248 AATTTCCCTCTAGA 235 >seq59682 Length=3695 Score = 86.0 bits (94), Expect = 2e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 42382 TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTC 42441 |||||| ||| ||||||||||| ||||| | || |||||| | ||||||||| |||| Sbjct 407 TTTATTATCGACTTCATTGCTGCTCCTCCATTGGATATTGATCGTATTCGTGAATCTGTT 466 Query 42442 TCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAAC 42501 ||||| ||||| || ||||| ||||| || || |||| | | | |||| | Sbjct 467 TCTGGATCTCTACTTTATGGAAACAATATTATTCGAGGTGACATTATTCCTACTTCTGCA 526 Query 42502 GCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTAC 42561 || || || | ||||| || | || ||||||| || |||| |||||| | || Sbjct 527 GCTATAGGTTTGCATTTTTACCCAATATGGGAAGTAGCATCCGTTGATGAATGGTTACAC 586 Query 42562 AATGG 42566 ||||| Sbjct 587 AATGG 591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142039512558280