Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq64520 345 1e-90 seq533404 167 7e-37 seq147675 107 6e-19 seq81374 91.5 4e-14 seq10361 87.8 5e-13 >seq64520 Length=3547 Score = 345 bits (382), Expect = 1e-90 Identities = 561/805 (70%), Gaps = 2/805 (0%) Strand=Plus/Plus Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 ||| || || || || ||||||| ||| || |||||||| | |||||| ||| || || Sbjct 3 CCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAA 62 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 ||| ||||| || || || |||| ||||| || || || || || || |||||||| || Sbjct 63 ACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGT 122 Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235 ||||| ||||| || || | || || | ||| || | | ||||| ||||| Sbjct 123 TTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 182 Query 26236 AATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAAC 26295 || | || || |||||| || ||||||||| || || | || ||||| || Sbjct 183 GATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATAC 242 Query 26296 CCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATAC 26355 ||||| || || ||| || ||||||||||| || || || || || || |||||||| Sbjct 243 ACCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATAC 302 Query 26356 GAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTG 26415 | ||| ||||| ||||||||||| || || |||||||| |||||| ||| || ||||| Sbjct 303 AATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTG 362 Query 26416 TCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAAC 26475 || | || || | ||||| || || || || | | || |||| ||||||||| Sbjct 363 ACCAATTGGGTAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAAC 422 Query 26476 AAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGC 26535 | ||||| |||| ||| || || | | || || ||||||| | || || Sbjct 423 AGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGCTCCCACTCACGACCCATGTAACA 482 Query 26536 TGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCA 26595 ||||| || | ||||||||| | | ||| |||| ||| || || |||||||||| ||| Sbjct 483 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCA 542 Query 26596 CTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGA 26655 || || | | | |||||||| || ||||||||||| | || || || ||| | Sbjct 543 TTCATCAACGGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCAGAAGT 602 Query 26656 GGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTC 26715 || | | || ||||| || ||||||||||| || | || || || ||||| || || Sbjct 603 AGGAATAATGGCACCTGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTC 662 Query 26716 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAG 26774 ||| || ||||| ||||| || || || || || |||||||| | ||||| ||| | || Sbjct 663 ACGAATACCATCAATATCCACTGGAGGAGCAGCAATGAAGGCGATAATAAATACA-GAAG 721 Query 26775 TGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCT 26834 | || | | |||| || ||||| | || || |||||||| | || |||||||| | Sbjct 722 TTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTT 781 Query 26835 CAGTACTTGTAACCCACTCACAAAA 26859 | || || || | ||| | ||| || Sbjct 782 CGGTGCTGGTTATCCAGTTACAGAA 806 >seq533404 Length=557 Score = 167 bits (184), Expect = 7e-37 Identities = 182/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||||||| || || || |||||||||||||| || ||||||||||| | || |||||| Sbjct 316 GCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 375 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| |||| || | | ||| ||||| || Sbjct 376 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACCGAT 435 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||||||| || ||||| |||| |||||| | || || | | Sbjct 436 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 495 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| || ||||||| | |||||| ||| || ||| Sbjct 496 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATTTAAAGAACGAGAGTTGTTGAAA 555 Query 26117 CT 26118 || Sbjct 556 CT 557 >seq147675 Length=2096 Score = 107 bits (118), Expect = 6e-19 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 26318 AATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCA 26377 ||||||||||| || || || || || || |||||||| | ||| ||||| ||||||||| Sbjct 1293 AATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCA 1352 Query 26378 GAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAAC 26437 || || || |||||||| |||||| ||| || ||||| || | | || | ||||| Sbjct 1353 GAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTAGGTAGATCAAGAAA 1412 Query 26438 ACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCT 26497 | || || || | | || |||| ||||||||||| |||| |||| ||| ||| Sbjct 1413 ATAGCAGTCGCAGCTGTAACAGGAGCTGAATATGCAACAACAGTCCAAGGTCGCATACCT 1472 Query 26498 AG 26499 || Sbjct 1473 AG 1474 >seq81374 Length=3119 Score = 91.5 bits (100), Expect = 4e-14 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 26315 TGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTA 26374 || ||||| ||||| || || || ||||| ||||||||||| | ||| ||||| |||||| Sbjct 508 TGCAATGGATGCATAAGGATGTTGTGTTCGGCTTGGAATACAATCATGAAGTTGAAAGTA 567 Query 26375 CCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAG 26434 ||| | || | |||||||| |||| | ||| || ||||| || | || || | |||| Sbjct 568 CCAAAAATTCATAGAGGCATACCATTAGAAAAGCTTCCTTGACCAATTGGGTAGATTAAG 627 Query 26435 AACAC 26439 || || Sbjct 628 AAAAC 632 >seq10361 Length=7172 Score = 87.8 bits (96), Expect = 5e-13 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||||||| || || || |||||||||||||| || ||||||||||| | || |||||| Sbjct 229 GCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCGATACCAAGGTTA 288 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || || | | ||||||| ||| |||| | || | | ||| ||||| || Sbjct 289 GCAAAATTAATGATTCCAGCCCAAGTACTAATTACATGACCTTGACTATCAACTACCGAT 348 Query 25997 TGGTTAAAGTTAAAACCATTTAG 26019 ||||| || || ||||||||||| Sbjct 349 TGGTTGAAATTGAAACCATTTAG 371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146175232971200