Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq64520 461 9e-125 seq836247 174 2e-38 seq533404 147 3e-30 seq147675 132 6e-26 seq59682 109 6e-19 seq348021 86.0 7e-12 >seq64520 Length=3547 Score = 461 bits (510), Expect = 9e-125 Identities = 570/780 (73%), Gaps = 0/780 (0%) Strand=Plus/Minus Query 154993 GACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCT 155052 || ||||| | || | || ||||| |||||| | ||||||||| | | | | || Sbjct 782 GAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCA 723 Query 155053 GCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGT 155112 || | || ||| |||||||||||||||| ||||| || || ||||||||||||||| Sbjct 722 ACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGT 663 Query 155113 GAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCT 155172 ||||| || |||| ||| || | ||||| ||||| || || || ||||| || | ||| Sbjct 662 GAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCAGGTGCCATTATTCCT 603 Query 155173 AGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAG 155232 | ||| || || ||| | || || || || || |||||||||||| | ||||||| Sbjct 602 ACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAA 543 Query 155233 TGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACA 155292 ||||| |||||||||||||||| |||| | || | |||||| | | || | | Sbjct 542 TGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT 483 Query 155293 GCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGT 155352 ||| |||||| ||||||| ||| || |||||| || ||||| |||||||| | Sbjct 482 TGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCT 423 Query 155353 GTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGT 155412 |||||||| || || || || | |||||| ||||| ||| | | || || | ||| Sbjct 422 GTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTACCCAATTGGT 363 Query 155413 CAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTC 155472 ||||| || ||||||| |||||||| || || ||||||||||| |||| ||| | Sbjct 362 CAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 303 Query 155473 GTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGT 155532 || ||||| || || ||||| |||||||||||||| || |||||||| || ||||| ||| Sbjct 302 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGT 243 Query 155533 GTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATC 155592 || ||||| || || || || ||||||||| ||||| ||||| || ||| | ||| Sbjct 242 GTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATC 183 Query 155593 CGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAA 155652 | ||||| || || | || ||| || | ||||||| ||||| |||||||||||| Sbjct 182 AGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAA 123 Query 155653 ACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCC 155712 |||||||| || || || |||||||| || || || || | |||||||| ||||| Sbjct 122 ACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGT 63 Query 155713 TTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGG 155772 ||||||||||| | | | || |||||||| ||||| |||||||| || | |||||| Sbjct 62 TTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGG 3 >seq836247 Length=317 Score = 174 bits (192), Expect = 2e-38 Identities = 218/299 (73%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 155425 TCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCA 155484 ||||||| |||||||| | || | ||||||||| |||| ||| | || ||||| || Sbjct 3 TCTGATGGTATGCCTCTAAGAATTTATGGTACTTTCAACTTCATGATTGTATTCCAGGCT 62 Query 155485 GAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGA 155544 || ||||| |||||||||||||| || |||||||| | ||| | ||| || | || Sbjct 63 GAGCACAACATCCTTATGCACCCATTTCACATGCTATGCGTAACTATTGTATTTGACGGC 122 Query 155545 TCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACT 155604 || || || ||||||||| ||||| ||||| || ||| | ||| | ||||| || Sbjct 123 TCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACA 182 Query 155605 GAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATT 155664 || | | ||| || | ||||||| ||| | |||||||||||||||||||| || Sbjct 183 GAAAATAAATCTGCTAATGAAGGTTACATATTCAGTCAAGAAGAAGAAACTTATAATATC 242 Query 155665 GTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTC 155723 || || |||||||| || || || || | |||||||| ||||| ||||||| ||| Sbjct 243 GTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAGCTC 301 >seq533404 Length=557 Score = 147 bits (162), Expect = 3e-30 Identities = 181/246 (74%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 155713 TTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGG 155772 ||||||||||| | | | | |||||||| ||||| |||||||| || | |||||| Sbjct 554 TTCAACAACTCTCGTTCTTTAAATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGG 495 Query 155773 GCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAG 155832 |||||| | ||| | || ||||| |||||||| || |||||||| |||||||| Sbjct 494 TTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 435 Query 155833 TCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGC 155889 || ||||| || |||| || || || ||| ||||| || || ||||||| Sbjct 434 TCGGTAGTTGA---TAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGT 378 Query 155890 GCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTT 155949 ||| |||||||||||||| ||||| || ||||| ||||| || |||||||| ||| | Sbjct 377 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACTTA 318 Query 155950 GCTGCT 155955 |||||| Sbjct 317 GCTGCT 312 >seq147675 Length=2096 Score = 132 bits (146), Expect = 6e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 155302 GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGT-GTTGCATA 155360 |||||| ||||||| ||| || || ||| || ||||| ||||||| |||| |||||||| Sbjct 1501 GGTCGTGAGTGGGAGCTTAGTTTCCATCTAGGTATGCGACCTTGGA-CTGTTGTTGCATA 1443 Query 155361 CTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTC 155420 || || || || | |||||| ||| | ||| | | || | | |||||||| Sbjct 1442 TTCAGCTCCTGTTACAGCTGCGACTGCTATTTTCTTGATCTACCTAATTGGTCAAGGAAG 1383 Query 155421 TTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCA 155480 || ||||||| |||||||| || || ||||||||||| |||| ||| | || ||||| Sbjct 1382 CTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCA 1323 Query 155481 AGCAGAACACAATATCCTTATGCACCCCTT 155510 || || ||||| |||||||||||||| || Sbjct 1322 GGCTGAGCACAACATCCTTATGCACCCATT 1293 >seq59682 Length=3695 Score = 109 bits (120), Expect = 6e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 155062 TTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTC 155121 || ||| ||| |||||||||||| ||||| | || |||||| ||||||||||| | || Sbjct 407 TTTATTATCGACTTCATTGCTGCTCCTCCATTGGATATTGATCGTATTCGTGAATCTGTT 466 Query 155122 GCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAAC 155181 |||| ||| || | ||||| ||||| || || |||| || | |||| ||| Sbjct 467 TCTGGATCTCTACTTTATGGAAACAATATTATTCGAGGTGACATTATTCCTACTTCTGCA 526 Query 155182 GCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTAC 155241 || || ||| | || || || || || ||||||| |||| | ||||||| ||||| || Sbjct 527 GCTATAGGTTTGCATTTTTACCCAATATGGGAAGTAGCATCCGTTGATGAATGGTTACAC 586 Query 155242 AATGG 155246 ||||| Sbjct 587 AATGG 591 >seq348021 Length=939 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 155626 GGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTC 155685 ||||| | ||||| |||||||||||||||||||| || || || |||||||| || || Sbjct 843 GGTTATAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTT 902 Query 155686 GGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACT 155722 || || | |||||||| ||||| |||||||||| Sbjct 903 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACT 939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578430450411600