Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq64520 383 5e-102 seq836247 147 6e-31 seq147675 125 2e-24 seq533404 123 7e-24 seq81374 107 5e-19 seq10361 80.6 8e-11 >seq64520 Length=3547 Score = 383 bits (424), Expect = 5e-102 Identities = 561/788 (71%), Gaps = 8/788 (1%) Strand=Plus/Plus Query 40732 AAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGAAATATTA 40791 ||||| | || ||||| |||| | ||| |||||||| ||||||||| || || | Sbjct 23 AAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCA 82 Query 40792 GTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAACT 40851 || ||||| ||||| || || |||||||| |||||||| || |||| ||||| || Sbjct 83 ATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCTTCTTGACCGAATC 142 Query 40852 TATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGA---TTGAGGAAGTAA 40908 | || || | || |||||| |||| ||||| |||| || | | |||| || Sbjct 143 TGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGT--TAC 200 Query 40909 CAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCA 40968 ||| | || ||||||||| ||| | | || || || || || || ||||| |||| Sbjct 201 CAAAGAA-CCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACGCCTAGCA 259 Query 40969 TATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATG 41028 | || ||||||||||| || |||||||| || || ||||| |||| |||||||||||| | Sbjct 260 TGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAG 319 Query 41029 TTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTA 41088 | ||| ||||||| ||||||||||||||| || || ||||| | ||| || | | Sbjct 320 TACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCA 379 Query 41089 AGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCA 41148 |||| ||||| || |||| | ||||||| ||||| ||| ||||| |||| || Sbjct 380 AGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCA 439 Query 41149 TACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAA 41208 |||| || | | | ||| ||||||| | ||| ||| ||||| || | ||| | Sbjct 440 TACCCAGACGGAAACTAAGCTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGA 499 Query 41209 AGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGTGCCGG 41268 |||| | ||||| |||| ||| || || || ||||||| ||| || || | | | | Sbjct 500 AGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAACCATTCATCAACGGATGCTG 559 Query 41269 CTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAG 41328 ||||||| |||||||| ||||| | || || || ||| | |||| | || || | Sbjct 560 CTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCTG 619 Query 41329 ATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATAT 41388 | ||||||||||| || || | || || || ||||| || ||||| || ||||| |||| Sbjct 620 AAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATAT 679 Query 41389 CTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAATGCT 41447 | || || || || || || |||||||| || || ||| | || || || | ||| | Sbjct 680 CCACTGGAGGAGCAGCAATGAAGGCGATAATAAATACA-GAAGTTGCGGTCAATAAGGTA 738 Query 41448 GGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCCAG 41507 || ||||| | ||||||||||| || | ||| || ||||| |||||||| || | |||| Sbjct 739 GGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAG 798 Query 41508 TTACAAAA 41515 ||||| || Sbjct 799 TTACAGAA 806 >seq836247 Length=317 Score = 147 bits (162), Expect = 6e-31 Identities = 213/298 (71%), Gaps = 6/298 (2%) Strand=Plus/Minus Query 40765 TGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGT 40824 ||||||| ||||||||| || || | || ||||| ||||| || || |||||||| | Sbjct 297 TGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATAT 238 Query 40825 TATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGG 40884 ||||||| || |||| |||| || | || || | || |||| | |||| |||| Sbjct 237 TATAAGTTTCTTCTTCTTGACTGAATATGTAACCTTCATTAGCAGATTTATTTTCTGTGG 178 Query 40885 TCTCCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCAC 40941 | |||| || | | |||| || ||| | || ||||||||| ||| | | | Sbjct 177 TTTCCCTGATCAAACTAGAGGT--TACCAAAGAA-CCATGCATAGCACTAAATAGGGAGC 121 Query 40942 CACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTG 41001 | |||| || | |||| ||||| || ||||||||||| || |||||||| || | Sbjct 120 CGTCAAATACAATAGTTACGCATAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAG 61 Query 41002 CTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGA 41059 | ||||| |||| |||||||||||| || ||| |||| || ||||||||||||||| Sbjct 60 CCTGGAATACAATCATGAAGTTGAAAGTACCATAAATTCTTAGAGGCATACCATCAGA 3 >seq147675 Length=2096 Score = 125 bits (138), Expect = 2e-24 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 40974 AATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCA 41033 ||||||||||| || |||||||| || || ||||| |||| |||||||||||| || ||| Sbjct 1293 AATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCA 1352 Query 41034 CTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAAT 41093 ||||||| ||||||||||||||| || || ||||| | | | || | ||||| Sbjct 1353 GAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTAGGTAGATCAAGAAA 1412 Query 41094 ACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCT 41153 | ||| || |||| | ||||||| ||||| |||| |||| |||| ||||||| Sbjct 1413 ATAGCAGTCGCAGCTGTAACAGGAGCTGAATATGCAACAACAGTCCAAGGTCGCATACCT 1472 Query 41154 AG 41155 || Sbjct 1473 AG 1474 >seq533404 Length=557 Score = 123 bits (136), Expect = 7e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||||||||||||| || || ||||| ||||| || ||||| ||||||||||| || Sbjct 312 AGCAGCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 371 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | ||||| | ||||||||||||| ||| || || | | || ||||| Sbjct 372 GTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTAC 431 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGT 40708 || ||||| || || |||||||| ||||| ||||||||||| ||||| | | || Sbjct 432 CGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGT 491 Query 40709 AAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTT 40768 | ||| || || | || || ||||| | || ||||| | || | ||| ||||| Sbjct 492 GAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATTTAAAGAACGAGAGTTGTT 551 Query 40769 GAA 40771 ||| Sbjct 552 GAA 554 >seq81374 Length=3119 Score = 107 bits (118), Expect = 5e-19 Identities = 126/165 (76%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 40971 TGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTT 41030 || ||||| ||||| || ||||||||||| |||||||| |||| |||||||||||| || Sbjct 508 TGCAATGGATGCATAAGGATGTTGTGTTCGGCTTGGAATACAATCATGAAGTTGAAAGTA 567 Query 41031 CCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAG 41090 ||| |||| || ||||||||||| ||| || || ||||| | ||| || | |||| Sbjct 568 CCAAAAATTCATAGAGGCATACCATTAGAAAAGCTTCCTTGACCAATTGGGTAGATTAAG 627 Query 41091 AATACAGCTAG-AGCTGCTGACAAT-GGAGCTGTGTATGCCACAA 41133 || ||| ||| || ||| |||| |||| || ||||| |||| Sbjct 628 AAAACA-ATAGTCGCAACTG-CAATAGGAGTTGAATATGCAACAA 670 >seq10361 Length=7172 Score = 80.6 bits (88), Expect = 8e-11 Identities = 106/147 (72%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||||||||||||| || || ||||| ||||| || ||||| ||||| ||||| || Sbjct 225 AGCAGCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCGATACCAAG 284 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | |||| | ||||||||||| ||| || | ||| | | || ||||| Sbjct 285 GTTAGCAAAATTAATGATTCCAGCCCAAGTACTAATTACATGACCTTGACTATCAACTAC 344 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAG 40675 || ||||| || || |||||||| || Sbjct 345 CGATTGGTTGAAATTGAAACCATTTAG 371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142207348072740