Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq64520 480 9e-131 seq836247 210 2e-49 seq147675 159 4e-34 seq533404 158 1e-33 seq71880 118 1e-21 seq81374 96.9 4e-15 seq348021 89.7 6e-13 seq10361 89.7 6e-13 >seq64520 Length=3547 Score = 480 bits (532), Expect = 9e-131 Identities = 566/766 (74%), Gaps = 0/766 (0%) Strand=Plus/Plus Query 67539 AACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTG 67598 |||||||| | || ||||| | ||||| |||||||| || | | | ||||||||| Sbjct 1 AACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTG 60 Query 67599 AAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAA 67658 ||| ||||| ||||||||||| || || || || |||||||| || || || || ||| Sbjct 61 AAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAA 120 Query 67659 GTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCT 67718 || ||||||||||| ||||| ||||||| | || || || | || || ||||| Sbjct 121 GTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCC 180 Query 67719 CTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAAT 67778 ||||| | | ||| || || | |||||| |||||||||||||| || || || |||||| Sbjct 181 CTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAAT 240 Query 67779 ACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAAC 67838 ||||| ||||| || ||||| || |||||||||||||||||||||||||| || ||||| Sbjct 241 ACACCAGCTACGCCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAAT 300 Query 67839 ACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCT 67898 || | |||| |||| |||||||||||||| || |||||||| | ||||| || ||| Sbjct 301 ACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCT 360 Query 67899 TGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCT 67958 ||||| | || |||| |||||| ||||| || || | || ||||| || ||||| Sbjct 361 TGACCAATTGGGTAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCA 420 Query 67959 ACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTAT 68018 ||| |||||||| |||||||| |||||| || ||| ||||||| |||||| ||| Sbjct 421 ACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGCTCCCACTCACGACCCATGTAA 480 Query 68019 GCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAAC 68078 | | || | | |||||| | || | |||| |||| |||||||| || ||| Sbjct 481 CAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCATTGTATAAC 540 Query 68079 CACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAA 68138 || ||||| | | |||||||||||| || || || || || | ||| || || ||| Sbjct 541 CATTCATCAACGGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCAGAA 600 Query 68139 CTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGT 68198 |||||| || ||||| ||||| || ||||| || || | || || || | ||||||| Sbjct 601 GTAGGAATAATGGCACCTGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGT 660 Query 68199 TCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTT 68258 || | |||||||| ||||| |||||||| || |||||||| || || || || || Sbjct 661 TCACGAATACCATCAATATCCACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAA 720 Query 68259 GCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAA 68304 | ||| | | ||| ||| |||||||| ||||| ||||| |||| Sbjct 721 GTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAA 766 >seq836247 Length=317 Score = 210 bits (232), Expect = 2e-49 Identities = 226/299 (76%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649 ||| |||||||| ||||| ||||||||||| || || || || |||||||| || || Sbjct 301 GAGCTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACG 242 Query 67650 ATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCA 67709 || || ||||| ||||||||||| | ||| ||||||| | || || | | || Sbjct 241 ATATTATAAGTTTCTTCTTCTTGACTGAATATGTAACCTTCATTAGCAGATTTATTTTCT 182 Query 67710 GTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAA 67769 || ||||| ||||| | | ||| || || | |||||| |||||||||||||| || || Sbjct 181 GTGGTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAG 122 Query 67770 CCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCT 67829 || | |||||| | ||| | ||||| || |||||||||||||||||||||||||| Sbjct 121 CCGTCAAATACAATAGTTACGCATAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 62 Query 67830 GCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGA 67888 || ||||| || | |||| |||| ||||||||| |||| | |||||||| | ||||| Sbjct 61 GCCTGGAATACAATCATGAAGTTGAAAGTACCATAAATTCTTAGAGGCATACCATCAGA 3 >seq147675 Length=2096 Score = 159 bits (176), Expect = 4e-34 Identities = 163/210 (78%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 67803 AATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCA 67862 |||||||||||||||||||||||||| || ||||| || | |||| |||| ||||||||| Sbjct 1293 AATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCA 1352 Query 67863 GAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAAC 67922 ||||| || |||||||| | ||||| || |||||||| | | |||| |||||| Sbjct 1353 GAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTAGGTAGATCAAGAAA 1412 Query 67923 ACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTAC-ACAGATCCAAGGACGCATACC 67981 | ||| || || | || ||||| || ||||| || |||| ||||||| |||||||| Sbjct 1413 ATAGCAGTCGCAGCTGTAACAGGAGCTGAATATGCAACAACAG-TCCAAGGTCGCATACC 1471 Query 67982 AAGACGGTAAGAAAGTTCCCACTGACGACC 68011 ||| || || ||| ||||||| |||||| Sbjct 1472 TAGATGGAAACTAAGCTCCCACTCACGACC 1501 >seq533404 Length=557 Score = 158 bits (174), Expect = 1e-33 Identities = 184/247 (74%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| | ||| |||||||| || ||||| ||||| || |||||||||||||| ||||| Sbjct 312 AGCAGCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 371 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || | ||||| ||| || ||||||||| ||| || || ||| ||||| Sbjct 372 GTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTAC---ACGGCCTTGACTATCAAC 428 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||| |||||||| || |||||||| |||||||| | ||| | || Sbjct 429 TACCGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGC 488 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 |||||||||||| | || ||||| | ||||| |||||||| | | | | ||||| Sbjct 489 AGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATTTAAAGAACGAGAGTT 548 Query 67595 GTTGAAA 67601 ||||||| Sbjct 549 GTTGAAA 555 >seq71880 Length=3346 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 67730 AGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTAC 67789 |||| | || | |||||| |||||| ||||| || || | ||||||||||| ||| Sbjct 1723 AGAAATGACCAAAGAACCATGCATAATGCTAAATAGGGAGCTTCCGAATACACCAACTAT 1664 Query 67790 TCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTA 67849 || ||||| | |||||||||||||||||||||||||| || ||||| | | | || | Sbjct 1663 GCCTAGCATTCGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATGCAATCGTGAA 1604 Query 67850 GTTAAAAGTACCAGAAATACCAAGAGGCAT 67879 ||| |||| |||| |||| || |||||||| Sbjct 1603 GTTGAAAGCACCAAAAATTCCTAGAGGCAT 1574 >seq81374 Length=3119 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 67800 TGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTA 67859 || ||||| ||||||||||||||||| || |||||||| || | |||| |||| |||||| Sbjct 508 TGCAATGGATGCATAAGGATGTTGTGTTCGGCTTGGAATACAATCATGAAGTTGAAAGTA 567 Query 67860 CCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAG 67919 ||| |||| | |||||||| | | ||| || |||||||| | || |||| ||| Sbjct 568 CCAAAAATTCATAGAGGCATACCATTAGAAAAGCTTCCTTGACCAATTGGGTAGATTAAG 627 Query 67920 AACACA 67925 || ||| Sbjct 628 AAAACA 633 >seq348021 Length=939 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 67591 AGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAA 67650 ||||||||||| ||||| ||||||||||| || || || || |||||||| || || | Sbjct 939 AGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGA 880 Query 67651 TGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACC 67687 | || ||||| ||||||||||| ||||| | ||||| Sbjct 879 TATTATAAGTTTCTTCTTCTTGACCGAATCTATAACC 843 >seq10361 Length=7172 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| | ||| |||||||| || ||||| ||||| || ||||||||||| || ||||| Sbjct 225 AGCAGCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCGATACCAAG 284 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCGTCAACGAC 67477 || |||| ||| | ||||||||| ||| || | ||| ||||| || Sbjct 285 GTTAGCAAAATTAATGATTCCAGCCCAAGTACTAATTACATGACCTTGACTATCAACTAC 344 Query 67478 GGATTGGTTGAAGTTGAAACCGTTGAG 67504 ||||||||||| |||||||| || || Sbjct 345 CGATTGGTTGAAATTGAAACCATTTAG 371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560738348607600