Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_021073.1 Length=107218 Score E Sequences producing significant alignments: (Bits) Value seq118173 199 3e-46 seq30067 174 1e-38 seq493767 170 1e-37 seq159469 156 3e-33 seq200536 105 5e-18 >seq118173 Length=2464 Score = 199 bits (220), Expect = 3e-46 Identities = 599/922 (65%), Gaps = 41/922 (4%) Strand=Plus/Minus Query 10935 AAACAAAAAACGACCAACTGAAGGAGCCGATGTTCTTCGGCCAATCAGTTAACGTATCCC 10994 ||| |||||| | ||||| || || || ||||| || || ||| | || || | | Sbjct 2399 AAAAAAAAAATAATCAACTTAAAGAACCTATGTTTTTTGGGCAACCTGTAAATATTGCTA 2340 Query 10995 GTTACGACCAACAGAAACATGATGTTTTTGAGAAACTAACTCAGAAGCAACTATCATTCT 11054 | || || ||||| ||| || || ||||||| || ||| | | || ||| ||||||| | Sbjct 2339 GGTATGATCAACAAAAATATAATATTTTTGAACAATTAATTGAAAAACAATTATCATTTT 2280 Query 11055 TCTGGCGTCCCGAAGAAGTTGATGTGTCACAAGACCGAATCGACTA-CAGTAAAATGAC- 11112 | ||| | || |||||| | ||| | || | || |||| || | || ||| | || Sbjct 2279 TTTGGAGACCTGAAGAAATAGATCTCTCTCGTGATAGAATAGATTTTCA--AAACTTACC 2222 Query 11113 TGATGCGGAGAAACACATCTTCATTAGTAACCTGAAGTACCAAACATTACTCGACTCGAT 11172 | || || ||||| || || |||||||| | || || ||||||||||| || || || Sbjct 2221 TAATAATGAAAAACATATTTTTATTAGTAATTTAAAATATCAAACATTACTTGATTCTAT 2162 Query 11173 CCAAGGCCGTAGCCCGAATATGGCGTTCCTGCCTATTGTGTCACTACCAGAAGTCGAAAC 11232 ||||| | ||||| ||||| || || | || || | || | || ||| | || || Sbjct 2161 TCAAGGAAGAAGCCCTAATATAGCTTTTTTACCAATCATTTCTATTCCTGAACTAGAGAC 2102 Query 11233 TTGGGTAGAAACGTGGAGCTTCAGCGAAACCATCCACTCTCGTTCATACACACACATCAT 11292 ||||| ||||| ||| || ||||| || || |||||||| || || || || || Sbjct 2101 ATGGGTTGAAACATGGTCTTTTTCAGAAACTATACATTCTCGTTCTTATACTCATATAAT 2042 Query 11293 TCGCAATATTGTCAATGACCCTAGTATTGTGTTCGATGATGTTGTTGAGAATAAGCACAT 11352 | | || |||||||| || | | || || |||||| || || ||||| || || Sbjct 2041 TAGAAACATTGTCAACTCTCCATCTGTAGTATTTGATGATATTATTTCAAATAAACATAT 1982 Query 11353 CCTAGAGCGAGCTAAAGATATTGCTCGTTACTACGACGATCTCA--------------TC 11398 || || |||||| ||||| || || || || || || | | Sbjct 1981 TAATGATCGTGCTAAAAATATTTCTATCTATTATGATGAACTGATAACATTGACTAGTTA 1922 Query 11399 TTGGCAT------GCAAAGAGCA-----TGAGCTAAACGGCAAACACACAA--------- 11438 ||||||| | | || ||| | || |||| | ||| | | | Sbjct 1921 TTGGCATTTATTAGGAGAGGGCATTCATTTAG-TAAATGAAAAAAAAATTAATATTAATT 1863 Query 11439 TGCGCGACCTAAAGAAAAAGTTGTACTTGTGCATGATGGCTGTTAATGTATTAGAAGCAG 11498 ||| ||||| |||| || || | || | || ||| ||||| ||||||||| Sbjct 1862 TGCATTTGCTAAAAAAAAGATTATATCTATGTTTAATAAGTGTAAATGTTTTAGAAGCAA 1803 Query 11499 TTCGTTTCTACGTTAGTTTCGCTTGTTCATTTGCATTCGCTGAACGCGAGATTATGGAAG 11558 || | || || |||||||| || |||||||||||||| || ||| | || | ||||||| Sbjct 1802 TTAGGTTTTATGTTAGTTTTGCATGTTCATTTGCATTTGCAGAAAGAGAACTAATGGAAG 1743 Query 11559 GTAATGCTAAAATCATCAAGCTT-ATTGCTCGTGATGAAGCACTACACCAAAGCGGTACA 11617 | ||||| ||||| || ||| || || || |||||||||||| |||| | || || || Sbjct 1742 GAAATGCAAAAATTAT-AAGATTAATAGCACGTGATGAAGCATTACATCTAACAGGAACT 1684 Query 11618 CAGCACATGCTGAAGATGTGGAACAACGGCACCGATGATATGGAAATGGCTTCTATCGCA 11677 || || || | || | | | ||| | ||||| | | |||| ||| | Sbjct 1683 CAACATATTTTAAACCTTTTAAGTAACATAAAAAATGATGAGCATATGGAAGATATAGTT 1624 Query 11678 CATGAGTGTCGCGAAGAGTCAATCGAAATATTCAAGATGGCCGAAGAACAAGAGAAAGAC 11737 || ||| ||||| | || | ||||||| ||| ||||||| ||| | Sbjct 1623 TTAGAATGTAAAGAAGAAGCTATTAATATATTCATTTCTGCCTCGCAACAAGAAAAAAAA 1564 Query 11738 TGGGCAAACTATCTATTCAAAGATGGTGGTATGATCGGACTAAACAAAGATATTCTATGT 11797 ||||| | ||| ||||| || | || ||| | ||| |||| ||||||||||| || Sbjct 1563 TGGGCTGAATATTTATTCCAAAACGGCTCGATGCTAGGATTAAATAAAGATATTCTTTGG 1504 Query 11798 GAATATGTTGAGTACATCACAA 11819 | ||| | || || ||||||| Sbjct 1503 CAGTATATAGAATATATCACAA 1482 >seq30067 Length=5021 Score = 174 bits (192), Expect = 1e-38 Identities = 291/418 (70%), Gaps = 2/418 (0%) Strand=Plus/Plus Query 9236 ACATTTGAAATCTCCCTCCCGACACCAATCATGTCTGGTGTTCGTACACCGACCCGCCAA 9295 || ||| |||| || | || |||||||| |||||||| || | || || || || ||| Sbjct 3302 ACTTTTAAAATTTCATTACCAACACCAATTATGTCTGGAGTCAGAACTCCTACTCGTCAA 3361 Query 9296 TTCAGCTCATGCGTAAAAATCGAAAGCGGTGATAGCCTAAAATCAATCAATGCAACATCA 9355 || || || || || ||| ||| | | ||||| |||| || || ||||| ||| | Sbjct 3362 TTTAGTTCTTGTGTTTTAATTGAATGTGCTGATAATTTAAATTCCATTAATGCGACAACT 3421 Query 9356 GGCGCAATCGTGAGTTACGTTTCACAGCGTGCAGGTATTGGCATTAACGCGGGTCGTATC 9415 || | || || | || ||||| || ||||| || ||||| ||||| || || | || Sbjct 3422 AGCTCTATTGTTAAATATGTTTCCCAACGTGCTGGAATTGGTATTAATGCAGGACAAATT 3481 Query 9416 CGAGCATTAGGTTCTGAGATTCGTGGTGGTGAAGCGGTACATACTGGTTGTATCCCATTC 9475 || |||||||| | ||| | || ||||| | |||||||||||||| || || Sbjct 3482 CGCGCATTAGGAAGTCCTATTAGAAACGGAGAAGCATTTCATACTGGTTGTATACCTTTT 3541 Query 9476 TACAAACACTTCCAAACAGCAGTGAAATGTTGTAGCCAAGGCGGTGTTCGTGGCGGCGCG 9535 || ||||| || |||| || || |||| |||| ||||| |||||| | || || || Sbjct 3542 TATAAACATTTTCAAAGCGCTGTAAAATCTTGTTCTCAAGGAGGTGTTAGAGGTGGAGCT 3601 Query 9536 GCAACGGTATTCTACCCAATGTGGCACCTAG-AGTACAAATCACTAATCGTACTCAAGAA 9594 ||||| | || || ||||| ||||| | | ||| ||| || | || | || || Sbjct 3602 GCAACTATTTTTTATCCAATATGGCATTTTGAAGTTGAAA-ATTTATTAGTTTTAAAAAA 3660 Query 9595 CAACCGTGGTATCGAAGAAAACCGTGTACGTCATATGGACTACGGTGTACAAATTAAT 9652 |||| | || || |||||||| | ||||||||| | ||||| | | ||||||||| Sbjct 3661 CAACAGGGGAATTGAAGAAAATAGAGTACGTCATGTCGACTATGCAATTCAAATTAAT 3718 >seq493767 Length=615 Score = 170 bits (188), Expect = 1e-37 Identities = 312/457 (68%), Gaps = 0/457 (0%) Strand=Plus/Plus Query 10935 AAACAAAAAACGACCAACTGAAGGAGCCGATGTTCTTCGGCCAATCAGTTAACGTATCCC 10994 ||| ||||||| | ||||| || || || ||||| || || ||| | || || | | | Sbjct 47 AAAAAAAAAACAATCAACTTAAAGAACCTATGTTTTTTGGACAACCTGTAAATATTGCTC 106 Query 10995 GTTACGACCAACAGAAACATGATGTTTTTGAGAAACTAACTCAGAAGCAACTATCATTCT 11054 | || || || || ||| || || | ||||| |||||| | | || ||| ||||||| | Sbjct 107 GATATGATCAGCAAAAATATAATATATTTGAACAACTAATTGAAAAACAATTATCATTTT 166 Query 11055 TCTGGCGTCCCGAAGAAGTTGATGTGTCACAAGACCGAATCGACTACAGTAAAATGACTG 11114 | ||| | || || ||| | ||| | || ||| ||||| || | || | | | Sbjct 167 TTTGGAGACCTGAGGAAATAGATCTTTCTAGAGATCGAATAGATTTTCAAAATCTACCGG 226 Query 11115 ATGCGGAGAAACACATCTTCATTAGTAACCTGAAGTACCAAACATTACTCGACTCGATCC 11174 || || |||||||| || |||||||| | || || ||||||||||| || || || | Sbjct 227 ATCATGAAAAACACATTTTTATTAGTAATTTAAAATATCAAACATTACTTGATTCAATTC 286 Query 11175 AAGGCCGTAGCCCGAATATGGCGTTCCTGCCTATTGTGTCACTACCAGAAGTCGAAACTT 11234 |||| | || || ||||| || || | |||||| | || | |||||| | ||||| | Sbjct 287 AAGGAAGAAGTCCTAATATAGCTTTTTTACCTATTATTTCTATTCCAGAACTGGAAACAT 346 Query 11235 GGGTAGAAACGTGGAGCTTCAGCGAAACCATCCACTCTCGTTCATACACACACATCATTC 11294 || | ||||| ||| || ||||| || || || ||||| || || || || || Sbjct 347 GGATTGAAACATGGTCTTTTTCAGAAACTATTCATTCACGTTCTTATACTCATATAATAA 406 Query 11295 GCAATATTGTCAATGACCCTAGTATTGTGTTCGATGATGTTGTTGAGAATAAGCACATCC 11354 | |||||||| || |||| | || || |||||| || ||| ||| | || || | Sbjct 407 GAAATATTGTTAACTCCCCTTCACTGGTATTTGATGATATTATTGCCAATCAACATATTC 466 Query 11355 TAGAGCGAGCTAAAGATATTGCTCGTTACTACGACGA 11391 || |||||| || ||||| || ||||| || || Sbjct 467 ATGATCGAGCTCAAAATATTTCTATATACTATGATGA 503 >seq159469 Length=1977 Score = 156 bits (172), Expect = 3e-33 Identities = 287/418 (69%), Gaps = 2/418 (0%) Strand=Plus/Minus Query 9236 ACATTTGAAATCTCCCTCCCGACACCAATCATGTCTGGTGTTCGTACACCGACCCGCCAA 9295 || ||| |||| || | || ||||| || |||||||| || || || || || || || Sbjct 1707 ACTTTTAAAATTTCATTACCAACACCCATTATGTCTGGAGTACGAACTCCTACTCGTCAG 1648 Query 9296 TTCAGCTCATGCGTAAAAATCGAAAGCGGTGATAGCCTAAAATCAATCAATGCAACATCA 9355 || || || || || ||||||| | | ||||| |||| || || ||||| || | Sbjct 1647 TTTAGTTCTTGTGTTTTAATCGAATGTGCTGATAATTTAAACTCTATTAATGCTACTACT 1588 Query 9356 GGCGCAATCGTGAGTTACGTTTCACAGCGTGCAGGTATTGGCATTAACGCGGGTCGTATC 9415 || | || || | || || ||||| ||||| || || || ||||| ||||| | || Sbjct 1587 AGCTCTATTGTTAAATATGTATCACAACGTGCTGGAATCGGTATTAATGCGGGACAAATT 1528 Query 9416 CGAGCATTAGGTTCTGAGATTCGTGGTGGTGAAGCGGTACATACTGGTTGTATCCCATTC 9475 || || ||||| | ||| | |||||||| | |||||||||||||| || || Sbjct 1527 CGCGCGTTAGGAAGTCCTATTAGAAACGGTGAAGCATTTCATACTGGTTGTATACCTTTT 1468 Query 9476 TACAAACACTTCCAAACAGCAGTGAAATGTTGTAGCCAAGGCGGTGTTCGTGGCGGCGCG 9535 || |||||||| |||| || || |||| ||| |||||||| || | || || || Sbjct 1467 TATAAACACTTTCAAAGTGCCGTAAAATCCTGTTCACAAGGCGGAGTGAGAGGAGGAGCT 1408 Query 9536 GCAACGGTATTCTACCCAATGTGGCACCTAG-AGTACAAATCACTAATCGTACTCAAGAA 9594 ||||| | || || ||||| ||||| | | ||| ||| || | || | || || Sbjct 1407 GCAACTATTTTTTATCCAATATGGCATTTTGAAGTTGAAA-GTTTATTAGTTTTAAAAAA 1349 Query 9595 CAACCGTGGTATCGAAGAAAACCGTGTACGTCATATGGACTACGGTGTACAAATTAAT 9652 || | || || |||||||| | || |||||||| || |||| | ||||||||| Sbjct 1348 TAATAGAGGAATTGAAGAAAATAGAGTGCGTCATATTGATTACGCACTTCAAATTAAT 1291 Score = 123 bits (136), Expect = 2e-23 Identities = 281/423 (66%), Gaps = 0/423 (0%) Strand=Plus/Minus Query 10424 AATTGGAATTGGTTGCGTAATGAGATTGTCCATAATGGCCTACGTAACTCTACTCTATCT 10483 || ||||||| ||||| ||| | ||| | |||| | | || || || ||||| Sbjct 519 AACTGGAATTTATTGCGAAATAAAATTAAAAAATATGGGTTGAGAAATTCAACATTATCT 460 Query 10484 GCATTCATGCCTTCGGAAACATCTTCTCAGGTATCTAACGCAACAAACGGCATCGAACCA 10543 || || |||||||| |||||||||||||| ||||||| ||||| || || || |||||| Sbjct 459 GCTTTAATGCCTTCAGAAACATCTTCTCAAATATCTAATGCAACCAATGGTATTGAACCA 400 Query 10544 CCTCGTGGCTACATGTCAGTTAAGCAGTCGAAGGATGGCATCTTAAAACAAATCGTACCG 10603 || | |||| || | || || || ||||| || ||| ||| | || || Sbjct 399 CCAAGAGGCTTTATTAGTATCAAAGTTTCAAAAGATGGAATATTACGTCAAGTAGTTCCA 340 Query 10604 GGTTATGATAAATACAAAGACCAATACGAGTTACTATGGAATATCAAAGACAACACTGGT 10663 | ||| | |||| ||| ||||| || || || ||| |||| | |||| || Sbjct 339 GACTATAAAAAATTAAAATTACAATATGAATTGCTTTGGGATATACCAAACAATCAAGGA 280 Query 10664 TACTTGGAATTGGTTGCCATCATGCAGAAGTTTGTGGATCAGGCTATTTCAGCAAACACT 10723 || | ||||| | || || ||||| || ||| | ||||| ||||||||| ||| ||| Sbjct 279 TATCTAGAATTAGCTGGTATTATGCAAAAATTTATTGATCAATCTATTTCAGTAAATACT 220 Query 10724 AACTACGACCCAGAAAACTACCCAGAAAGTAAGGTTCCAATCAAAAAGTTATTGCAAGAT 10783 | || || ||| ||| | | | | ||| |||| || ||| | | || | ||| Sbjct 219 CATTATGATCCAAAAAGATTTTTAAATAATAAAATTCCCATGAAACAACTGTTATATGAT 160 Query 10784 TTGGTGACATGTTATAGACTCGGCATCAAGACACTGTACTACCACAACACACGAGATGGT 10843 | || || ||||| ||| || | || ||| | || || || || || ||||| ||| Sbjct 159 CTTTTGCTATCTTATAAACTAGGTTTAAAAACATTATATTATCAAAATACTCGAGACGGT 100 Query 10844 GCT 10846 || Sbjct 99 TCT 97 >seq200536 Length=1633 Score = 105 bits (116), Expect = 5e-18 Identities = 214/318 (67%), Gaps = 0/318 (0%) Strand=Plus/Minus Query 11480 GTTAATGTATTAGAAGCAGTTCGTTTCTACGTTAGTTTCGCTTGTTCATTTGCATTCGCT 11539 |||||||| ||||||||| || | || || || ||||| ||||||||||||||||| || Sbjct 1604 GTTAATGTTTTAGAAGCAATTAGATTTTATGTAAGTTTTGCTTGTTCATTTGCATTTGCA 1545 Query 11540 GAACGCGAGATTATGGAAGGTAATGCTAAAATCATCAAGCTTATTGCTCGTGATGAAGCA 11599 ||| | || | |||||||| ||||| ||||| || | | || || || |||||||| Sbjct 1544 GAAAGAGAATTAATGGAAGGCAATGCAAAAATTATTAGATTAATAGCACGCGATGAAGCT 1485 Query 11600 CTACACCAAAGCGGTACACAGCACATGCTGAAGATGTGGAACAACGGCACCGATGATATG 11659 |||| || || || || || || | || | | | ||| | | || || Sbjct 1484 TTACATTTAACAGGAACTCAACATATTTTAAATCTTTTAAGCAATGTTAAAAATAATGAA 1425 Query 11660 GAAATGGCTTCTATCGCACATGAGTGTCGCGAAGAGTCAATCGAAATATTCAAGATGGCC 11719 | ||||| |||| || || | || | ||| | ||||||| | | || Sbjct 1424 AACATGGCAGATATCATTATAGAATGCAAAAATGAAGCTATCAATATATTCATGTTAGCT 1365 Query 11720 GAAGAACAAGAGAAAGACTGGGCAAACTATCTATTCAAAGATGGTGGTATGATCGGACTA 11779 | |||||||| ||| | ||||| | ||| |||| || ||||| ||| | ||| || Sbjct 1364 GCGGAACAAGAAAAAAAATGGGCTGAATATTTATTTCAAAATGGTTCAATGTTAGGATTA 1305 Query 11780 AACAAAGATATTCTATGT 11797 || ||||||||| | ||| Sbjct 1304 AATAAAGATATTATTTGT 1287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339310676846090