Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq75854 113 7e-20 seq40887 109 8e-19 seq86036 102 1e-16 seq48246 102 1e-16 seq48514 93.3 6e-14 seq102355 89.7 7e-13 seq90319 86.0 9e-12 >seq75854 Length=3247 Score = 113 bits (124), Expect = 7e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || |||| || || ||||||||||| || ||||| || || ||| ||| Sbjct 2568 AATGCAGATCTTCGTTAAGACGTTAACTGGAAAAACAATCACATTGGAGGTTGAAAGTTC 2509 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || || ||||| ||| ||||| || |||||||| || || || || || Sbjct 2508 TGATACGATCGACAATGTGAAGGCTAAGATACAGGACAAAGAAGGGATTCCACCGGATCA 2449 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| | |||| | ||| || |||||| | || ||| ||||||||| | ||||||| Sbjct 2448 ACAGCGTCTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTAGAACTTTAGCCGATTATA- 2390 Query 156002 TATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 | ||||||| || |||| | ||| | || || || || || || || Sbjct 2389 -ACATCCAAAAGGAATCGACTTTGCATCTGGTTTTGAGGTTGAGGGGAGG 2341 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| | || || || || ||||| ||||||||||| |||| Sbjct 2795 ATGCAGATCTTCGTCAAAACCCTCACCGGTAAGACAATTACCTTAGAAGTCGAGAGTTCT 2736 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||||| ||| || || || ||||||||||| || ||||| || || Sbjct 2735 GATACAATCGACAACGTCAAAGCCAAGATTCAGGATAAAGAAGGTATTCCTCCTGATCAG 2676 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | ||||| |||||| | |||||| |||||| ||| | || || ||| Sbjct 2675 CAGAGACTCATATTCGCCGGAAAGCAGTTAGAAGATGGCAGAACCTTAGCGGACTACAAT 2616 Query 156003 AT 156004 || Sbjct 2615 AT 2614 Score = 100 bits (110), Expect = 4e-16 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || ||| | |||||| | ||||| || || ||||| | || || || | Sbjct 3026 AATATGCAGATCTTTGTGAAAACACTAACTGGGAAGACGATTACTCTCGAGGTGGAGAGT 2967 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| ||| ||||| |||| || || || || || ||||| || ||||| || Sbjct 2966 TCAGATACCATTGATAACGTCAAAACCAAGATCCAGGACAAGGAAGGAATTCCTCCGGAT 2907 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | | || | ||||| ||||||||||| || |||||| || | || ||| Sbjct 2906 CAACAACGGCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCAGAACCCTAGCCGACTAT 2847 Query 156000 AATATATCCAAA--GAGGCGACGCTTCA 156025 | ||||||||| ||| | || ||||| Sbjct 2846 A--ATATCCAAAAGGAGTCAACCCTTCA 2821 >seq40887 Length=4418 Score = 109 bits (120), Expect = 8e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | || ||||||||||| || || ||||||||| ||| Sbjct 2073 ATGCAAATCTTCGTCAAAACTCTCACCGGAAAAACTATCACCTTGGAAGTCGAAAGCTCT 2132 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| ||| |||||| ||||| || ||||| || || ||||| ||| Sbjct 2133 GACACCATCGACAACGTCAAAGCTAAAATCCAAGACAAGGAAGGGATCCCACCAGACCAA 2192 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || || ||||| | |||||||| ||||| ||||| Sbjct 2193 CAGAGGTTGATCTTCGCCGGTAAACAGCTTGAAGA 2227 Score = 89.7 bits (98), Expect = 7e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || ||||||||||| || |||||||| || || || ||| Sbjct 2985 ATGCAGATATTTGTGAAGACGTTGACTGGAAAGACGATTACATTGGAGGTTGAGAGCTCT 3044 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || |||||| || || || ||||| ||||| || || || || || Sbjct 3045 GACACGATTGATAATGTGAAAGCGAAGATTCAGGATAAGGAAGGAATCCCACCGGATCAG 3104 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | ||| || |||||| | || ||| | || | | ||||||||| Sbjct 3105 CAGCGGTTGATCTTTGCAGGGAAGCAGTTGGAGGATGGTCGTACGCTTGCTGATTATAAT 3164 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| |||| | ||||| || Sbjct 3165 ATTCAGAAGGAGTCGACTTTGCATTTGGT 3193 >seq86036 Length=3019 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | || || || || ||||| | |||||||| ||| Sbjct 1121 ATGCAGATCTTTGTGAAAACCCTAACCGGTAAGACGATTACTCTTGAAGTCGAGAGTTCC 1062 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || ||||||| || ||||| || || ||||| || |||||||| ||| Sbjct 1061 GATACGATCGACAATGTGAAAACGAAGATACAGGACAAGGAAGGAATCCCTCCAGATCAA 1002 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | |||||||| ||||||||||| | | ||| | | ||||| ||| Sbjct 1001 CAACGTCTTATCTTCGCCGGTAAACAGCTCGAAGACGGCCGTACTCTCGCCGATTACAAT 942 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 ||| || || ||||||| ||| Sbjct 941 ATACAGAAGGAATCGACGCTCCAT 918 >seq48246 Length=4099 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 ||||||||||||||| |||||| || ||||||| || ||||||||||| || ||| Sbjct 1574 AAACACGCAAAATCACAGTGTAATCCCTCATCTCGCGAGATTAATTCGTTCGAGAAGGTT 1633 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 || || ||||| | || | ||| || | |||||| |||| ||| || | |||||| Sbjct 1634 AATCCAGGCATCAACCCACGTTTCTTCAACCAAAAAATCGCGCAGAAGCTTCCGGAAAAG 1693 Query 18275 AATATACCCTCAACGCACGCGAACGCTAT 18303 || || || |||||||| ||||| || || Sbjct 1694 AAAATCCCTTCAACGCAAGCGAAAGCGAT 1722 >seq48514 Length=4088 Score = 93.3 bits (102), Expect = 6e-14 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | || || || ||||||||||| | ||| | || || ||| || Sbjct 3169 AATGCAGATCTTCGTCAAGACGTTAACTGGAAAAACAGTCACACTGGAGGTTGAAAGCTC 3110 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 | ||| || || ||||| ||| ||||| || |||||||| || || || || || Sbjct 3109 TAATACGATCGACAATGTGAAGGCTAAGATACAGGACAAAGAAGGGATTCCACCGGATCA 3050 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | |||| | | ||||||||| | |||||| ||||||||| | ||||||| Sbjct 3049 ACAACGTCTGATCTTCGTTGGTAAGCAGTTGGAAGATGGTAGAACTTTAGCTGATTATA- 2991 Query 156002 TATATCCAAA 156011 | ||||||| Sbjct 2990 -ACATCCAAA 2982 >seq102355 Length=2708 Score = 89.7 bits (98), Expect = 7e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 155810 TTTATGTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGA 155869 ||| || | | | ||||| || ||| | ||||| | || || || || || || | || Sbjct 616 TTTGTGAATTTAGATGCAGATTTTTGTGAAAACCCTAACGGGGAAGACGATAACTCTCGA 675 Query 155870 AGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCAT 155929 |||||| ||| |||| || || || |||| || ||||| || || ||||| || Sbjct 676 AGTCGAGAGTTCCGATACGATCGACAATGTTAAAACGAAGATACAGGACAAGGAAGGAAT 735 Query 155930 ACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTT 155989 ||||| || |||||| | | || | |||||||| ||||||||||| | | ||| | Sbjct 736 TCCTCCGGATCAACAACGTCTTATCTTCGCCGGTAAACAGCTCGAAGACGGCCGTACTCT 795 Query 155990 ATCAGATTATAATATATCCAAAGAGGCGACGCTTCAT 156026 | ||||| ||||| ||||| ||||||| ||| Sbjct 796 CGCCGATTACAATATCCAAAAAGAATCGACGCTCCAT 832 >seq90319 Length=2932 Score = 86.0 bits (94), Expect = 9e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| | ||||| | || ||||| || || || | || |||||| || Sbjct 1625 ATGCAAATATTCGTCAAAACTCTTACCGGAAAGACCATCACTCTCGAGGTCGAAAGCTCC 1566 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||||||| || || ||||| || ||||| || || ||||| || Sbjct 1565 GACACCATCGATAACGTGAAAGCCAAGATCCAAGACAAGGAAGGTATCCCCCCAGATCAG 1506 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||||||||||| | ||||| || ||||| ||||| Sbjct 1505 CAAAGATTGATCTTCGCCGGAAAACAGCTAGAAGA 1471 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || |||||||| || || || ||||| || || || || |||| Sbjct 941 ATGCAGATTTTCGTGAAGACATTGACAGGGAAGACGATTACTTTGGAGGTGGAGAGTTCT 882 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || ||||| || || || || || || || || || || || ||| Sbjct 881 GACACGATTGATAATGTGAAGGCGAAGATTCAGGACAAGGAGGGGATCCCACCGGACCAA 822 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | ||||| |||||||| || ||| | ||||| | ||||||||| Sbjct 821 CAGCGGTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGGCGGACTTTGGCGGATTATAAT 762 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || || ||| |||| |||||| Sbjct 761 ATCCAGAAGGAGTCGACTCTTCAT 738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723856995276000