Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq27206 102 1e-16 seq35420 100 5e-16 seq119719 98.7 2e-15 seq40887 98.7 2e-15 seq75854 96.9 6e-15 seq48514 93.3 8e-14 seq107820 91.5 3e-13 seq488508 86.0 1e-11 seq64326 86.0 1e-11 seq246045 84.2 4e-11 >seq27206 Length=5223 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || |||||||||||| || | || | ||| | ||| | ||| || |||||| ||||| Sbjct 2599 AACACCACCTCTAAGACGCAGAACAAGATGCAGAGTGGACTCCTTTTGAATATTGTAATC 2658 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | |||| || | || || | || ||||||||||| || | |||||||| ||||| Sbjct 2659 AGCCAAAGTCCGCCCATCTTCAAGCTGCTTACCAGCAAATATAAGCCTCTGTTGATCAGG 2718 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || || || || || || || || || |||||| || ||||| || || Sbjct 2719 CGGAATACCCTCCTTGTCCTGAATCTTTGCCTTGACATTATCAATCGTATCCGAGCTCTC 2778 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||||||| || || || || || ||||| || | || |||||||| Sbjct 2779 AACCTCTAGAGTGATCGTCTTCCCTGTCAATGTCTTGACAAAAATCTGCAT 2829 >seq35420 Length=4697 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || | || ||||| | ||| | || || ||| || ||||| Sbjct 2135 ATACCACCTCTCAAACGAAGAACCAAATGGAGAGTTGATTCCTTCTGAATGTTGTAATCA 2076 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || |||| |||| ||| || || || || || || ||||||||||||||| Sbjct 2075 GCAAGAGTACGGCCGTCCTCCAGTTGCTTTCCGGCGAAGATCAACCTCTGTTGGTCAGGT 2016 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 |||||||| || |||||||| || ||| || || || || || || || || Sbjct 2015 GGTATTCCCTCCTTATCTTGGATCTTAGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCA 1956 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || || || || || | || || | ||| |||||||| Sbjct 1955 ACCTCCAGAGTGATTGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 1906 >seq119719 Length=2442 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39125 ACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 39184 ||| ||||| || ||||| ||| ||||| |||||||||| || ||| ||||| || Sbjct 195 ACAAGCAAAGTCACAATGTAGACCCTCGTCTCTAGATATAAGTTTATTTGAGAAAGTCAA 136 Query 39185 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 39244 |||||||||||||| ||||| || | |||||||||||| |||||||| | | ||| | Sbjct 135 CCCTGGCATTAATCCCCTCTTCTTTAACCAAAATATTGAACAAAAACTACAAAATAAGGA 76 Query 39245 TATA 39248 ||| Sbjct 75 AATA 72 >seq40887 Length=4418 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||| || | || ||||| ||||| | ||| || |||||||||||| | Sbjct 3211 CCACCACGAAGCCGGAGAACCAAATGCAAAGTCGACTCCTTCTGAATATTATAATCAGCA 3152 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | | || | || ||||| || || || ||||| || || | ||| || || ||||| Sbjct 3151 AGCGTACGACCATCCTCCAACTGCTTCCCTGCAAAGATCAACCGCTGCTGATCCGGTGGG 3092 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 |||||||| ||||| || || || ||| |||||| || || || || || || Sbjct 3091 ATTCCTTCCTTATCCTGAATCTTCGCTTTCACATTATCAATCGTGTCAGAGCTCTCAACC 3032 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || | ||||| || || ||||| || || || | ||||||||||| Sbjct 3031 TCCAATGTAATCGTCTTTCCAGTCAACGTCTTCACAAATATCTGCAT 2985 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| ||||| ||||| || || || || | ||||| ||||| ||||| || ||||| | Sbjct 2913 CGTCCTCCAACTGTTTTCCGGCGAAGATAAGCCTCTGCTGGTCCGGTGGGATCCCTTCCT 2854 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 ||||||| || || ||| |||||| || || || || ||| ||||| | |||| Sbjct 2853 TATCTTGGATCTTTGCTTTCACATTATCGATGGTGTCGGAGCTTTCAACTTCCAAGGTAA 2794 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| || || || || || | || |||||||| Sbjct 2793 TGGTTTTTCCGGTCAAGGTCTTCACAAAGATCTGCAT 2757 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| || | |||||||| || || || || ||||||||||| ||||| || ||||| | Sbjct 2229 CGTCTTCAAGCTGTTTACCGGCGAAGATCAACCTCTGTTGGTCTGGTGGGATCCCTTCCT 2170 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| |||||| ||| || || || || || || ||| ||||| | || | Sbjct 2169 TGTCTTGGATTTTAGCTTTGACGTTGTCGATGGTGTCAGAGCTTTCGACTTCCAAGGTGA 2110 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||||| || || | ||||| | ||| || ||||| Sbjct 2109 TAGTTTTTCCGGTGAGAGTTTTGACGAAGATTTGCAT 2073 >seq75854 Length=3247 Score = 96.9 bits (106), Expect = 6e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || |||||||||||| || || || | || ||||| | ||| || |||||| ||||| Sbjct 2109 AACACCACCTCTAAGACGCAAGACAAGGTGCAAAGTGGACTCCTTTTGAATATTGTAATC 2168 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | |||| | | || || | || || |||||||| || | ||||| || ||||| Sbjct 2169 AGCCAAAGTCCTCCCATCTTCAAGCTGCTTCCCAGCAAATATAAGCCTCTGCTGATCAGG 2228 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 ||| || || || ||||| || || || || |||||| || || || || || Sbjct 2229 TGGAATACCCTCCTTATCCTGAATCTTTGCCTTCACATTATCAATGGTGTCCGAGCTCTC 2288 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||||||| || || || || || ||||| || | || |||||||| Sbjct 2289 AACCTCTAGAGTGATCGTCTTCCCTGTCAATGTCTTGACAAAAATCTGCAT 2339 >seq48514 Length=4088 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 ||||||||||||||| || | || | || ||||| | || || ||| || ||||| Sbjct 2710 AATACCACCTCTAAGACGAAGGACAAGGTGCAAAGTTGATTCCTTTTGAATGTTGTAATC 2769 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | |||| || || || || | || || |||||||| || | |||||||| ||||| Sbjct 2770 AGCCAAAGTTCTCTCATCTTCAAGCTGCTTCCCAGCAAATATAAGCCTCTGTTGATCAGG 2829 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || || || ||||| || || || || |||||| || || || || || Sbjct 2830 CGGAATCCCCTCCTTATCCTGAATCTTTGCCTTCACATTATCAATGGTGTCCGAGCTCTC 2889 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| |||| ||| | || || || || ||||| || | || |||||||| Sbjct 2890 TACCTCTAAAGTGGTCGTCTTCCCTGTCAATGTCTTCACAAAAATCTGCAT 2940 >seq107820 Length=2620 Score = 91.5 bits (100), Expect = 3e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| || | |||||| || || ||||| | | ||| ||||| ||||| || ||||| | Sbjct 2094 CGTCCTCAAGTTGTTTCCCGGCGAAAATAAGACGCTGCTGGTCCGGTGGGATGCCTTCCT 2153 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| || || || ||||| || || || || ||||| || || | |||| Sbjct 2154 TGTCTTGGATCTTCGCCTTCACATTGTCGATTGTGTCGGAGGATTCAACCTCCAACGTAA 2213 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | || || ||||||| ||||| | ||| ||||||||||| Sbjct 2214 TCGTCTTCCCAGTTAGGGTTTTCACGAAGATCTGCATTTT 2253 >seq488508 Length=623 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 171966 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCT 172025 || ||||||||||| ||||| ||| ||||| || | ||| ||||| |||||||| Sbjct 109 CCCTCTTTATCTTGAATTTTGGATTTCACATTTTCAATTGAATCCGACGACTCTACTTCG 50 Query 172026 AGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| || ||||| ||||| || || || | ||| ||||||||||| Sbjct 49 AGAGTGATCGTTTTCCCAGTCAACGTCTTCACGAAGATCTGCATTTT 3 >seq64326 Length=3552 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||| || | ||| || | ||||| || || || || || ||||| || |||||||| Sbjct 2698 TGTTTGCCGGAAAAGATAAGCCTCTGCTGATCTGGAGGGATCCCTTCCTTTTCTTGTATC 2757 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| || ||||| || |||| || | ||| || || || || || ||||| ||| Sbjct 2758 TTAGCCTTGACATTGTCAATCATATCAGAAGTTTCAACCTCCAGGGTGATCGTTTTCCCA 2817 Query 172044 GTTAATGTTTTAATGAATATCTGCATT 172070 ||||| || || || |||||||||||| Sbjct 2818 GTTAACGTCTTGATAAATATCTGCATT 2844 >seq246045 Length=1351 Score = 84.2 bits (92), Expect = 4e-11 Identities = 129/183 (70%), Gaps = 1/183 (1%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || |||| ||| | |||| || | || |||||||| || || ||||| || || || Sbjct 396 ATGTTATTATCAGCCAAAGTTCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAACCTA 337 Query 171948 TGTTGG-TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 |||| | || ||||| || || ||||||||||| ||||| |||| || ||| || || Sbjct 336 TGTTTGATCGGGTGGAATCCCCTCTTTATCTTGAATTTTGGTTTTAACGTTATCAATGGT 277 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || || | || || | |||| || || ||||| || || |||| ||| ||||| Sbjct 276 GTCGGAGCTCACAACATCCAAGGTAACTGTATTCCCAGTAAAGGTCTTAACGAAGATCTG 217 Query 172067 CAT 172069 ||| Sbjct 216 CAT 214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895223516238000