Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_021344.2 Length=176227 Score E Sequences producing significant alignments: (Bits) Value seq159469 167 3e-36 seq30067 167 3e-36 >seq159469 Length=1977 Score = 167 bits (184), Expect = 3e-36 Identities = 310/454 (68%), Gaps = 6/454 (1%) Strand=Plus/Minus Query 41617 TTTCTACAACGCAATTTCGGATCGTAAGCTGTCGTTACCTACGCCTATTATGGCTGGTGT 41676 ||| || || |||||||| | ||| | || ||||| || || |||||| |||| || Sbjct 1726 TTTTTATAATGCAATTTCTACTTTTAAAATTTCATTACCAACACCCATTATGTCTGGAGT 1667 Query 41677 GCGTACTCCTACGCGTCAGTTTTCCAGTTGCGTAGTGATTGAATCAGGTGATTCACTGGG 41736 || |||||||| ||||||||| ||| || | || |||| | |||| | Sbjct 1666 ACGAACTCCTACTCGTCAGTTTAGTTCTTGTGTTTTAATCGAATGTGCTGATAATTTAAA 1607 Query 41737 TTCTCTGAATGCTGTAAC---CTCTGCGATCGTGAAGTATATTTCACAACGTGCTGGTAT 41793 ||| | |||||| || |||| || || || ||| | |||||||||||||| || Sbjct 1606 CTCTATTAATGCTACTACTAGCTCT---ATTGTTAAATATGTATCACAACGTGCTGGAAT 1550 Query 41794 CGGTGTAAACGCCGGACATATTCGCGCGATGGGTTCTAAAATCCGTGGTGGTGAAGCAGT 41853 |||| | || || ||||| ||||||||| | || | || | ||||||||| | Sbjct 1549 CGGTATTAATGCGGGACAAATTCGCGCGTTAGGAAGTCCTATTAGAAACGGTGAAGCATT 1490 Query 41854 TCATACAGGCGTGATCCCGTTCTGGAAACATATTCAGACAGCGGTTAAATCCTGTTCACA 41913 |||||| || || || || | ||||| |||| | || || |||||||||||||| Sbjct 1489 TCATACTGGTTGTATACCTTTTTATAAACACTTTCAAAGTGCCGTAAAATCCTGTTCACA 1430 Query 41914 AGGTGGTGTTCGTGGTGGTGCTGCAACGTTGTATTATCCGATCTGGCATTTGGAAGTTGA 41973 ||| || || | || || |||||||| | | |||||| || |||||||| |||||||| Sbjct 1429 AGGCGGAGTGAGAGGAGGAGCTGCAACTATTTTTTATCCAATATGGCATTTTGAAGTTGA 1370 Query 41974 AAACCTGCTGGTTCTGAAAAACAACAAAGGTGTTGAAAACAACCGTATCCGTCACCTGGA 42033 || | | ||| | ||||| || | ||| ||||| | || | | ||||| | || Sbjct 1369 AAGTTTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAATAGAGTGCGTCATATTGA 1310 Query 42034 TTATGGCGTACAGCTTAACGATTTGATGTATAAA 42067 ||| | | || |||| | || |||||| || Sbjct 1309 TTACGCACTTCAAATTAATAAATTAATGTATCAA 1276 >seq30067 Length=5021 Score = 167 bits (184), Expect = 3e-36 Identities = 310/454 (68%), Gaps = 6/454 (1%) Strand=Plus/Plus Query 41617 TTTCTACAACGCAATTTCGGATCGTAAGCTGTCGTTACCTACGCCTATTATGGCTGGTGT 41676 ||| ||||| || ||||| | ||| | || ||||| || || |||||| |||| || Sbjct 3283 TTTTTACAATGCTATTTCTACTTTTAAAATTTCATTACCAACACCAATTATGTCTGGAGT 3342 Query 41677 GCGTACTCCTACGCGTCAGTTTTCCAGTTGCGTAGTGATTGAATCAGGTGATTCACTGGG 41736 | |||||||| ||||| ||| ||| || | ||||||| | |||| | Sbjct 3343 CAGAACTCCTACTCGTCAATTTAGTTCTTGTGTTTTAATTGAATGTGCTGATAATTTAAA 3402 Query 41737 TTCTCTGAATGCTGTAAC---CTCTGCGATCGTGAAGTATATTTCACAACGTGCTGGTAT 41793 ||| | ||||| ||| |||| || || || ||| |||| ||||||||||| || Sbjct 3403 TTCCATTAATGCGACAACTAGCTCT---ATTGTTAAATATGTTTCCCAACGTGCTGGAAT 3459 Query 41794 CGGTGTAAACGCCGGACATATTCGCGCGATGGGTTCTAAAATCCGTGGTGGTGAAGCAGT 41853 ||| | || || ||||| |||||||| | || | || | || |||||| | Sbjct 3460 TGGTATTAATGCAGGACAAATTCGCGCATTAGGAAGTCCTATTAGAAACGGAGAAGCATT 3519 Query 41854 TCATACAGGCGTGATCCCGTTCTGGAAACATATTCAGACAGCGGTTAAATCCTGTTCACA 41913 |||||| || || || || | |||||| |||| | || || ||||| ||||| || Sbjct 3520 TCATACTGGTTGTATACCTTTTTATAAACATTTTCAAAGCGCTGTAAAATCTTGTTCTCA 3579 Query 41914 AGGTGGTGTTCGTGGTGGTGCTGCAACGTTGTATTATCCGATCTGGCATTTGGAAGTTGA 41973 ||| |||||| | ||||| |||||||| | | |||||| || |||||||| |||||||| Sbjct 3580 AGGAGGTGTTAGAGGTGGAGCTGCAACTATTTTTTATCCAATATGGCATTTTGAAGTTGA 3639 Query 41974 AAACCTGCTGGTTCTGAAAAACAACAAAGGTGTTGAAAACAACCGTATCCGTCACCTGGA 42033 ||| | | ||| | |||||||||| || ||||| | || | | ||||| | || Sbjct 3640 AAATTTATTAGTTTTAAAAAACAACAGGGGAATTGAAGAAAATAGAGTACGTCATGTCGA 3699 Query 42034 TTATGGCGTACAGCTTAACGATTTGATGTATAAA 42067 |||| | || |||| | || |||||| || Sbjct 3700 CTATGCAATTCAAATTAATAAATTCATGTATCAA 3733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557624032297200