Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_021529.2 Length=247511 Score E Sequences producing significant alignments: (Bits) Value seq30067 123 4e-23 seq159469 116 6e-21 >seq30067 Length=5021 Score = 123 bits (136), Expect = 4e-23 Identities = 284/425 (67%), Gaps = 12/425 (3%) Strand=Plus/Plus Query 63648 TTTTACAACGCTGTATCAAATCAGAAACTTTCTTTACCAACCCCGATCATGGCAGGTGTT 63707 |||||||| ||| | || | | ||| |||| |||||||| || || ||| | || || Sbjct 3284 TTTTACAATGCTATTTCTACTTTTAAAATTTCATTACCAACACCAATTATGTCTGGAGTC 3343 Query 63708 CGTACGCCAACTCGACAATTTAGCTCATGTGTTAAAATCGAATCTGGCGACTCTCTGCAT 63767 | || || ||||| |||||||| || |||||| ||| |||| || || | | || Sbjct 3344 AGAACTCCTACTCGTCAATTTAGTTCTTGTGTTTTAATTGAATGTGCTGATAATTTAAAT 3403 Query 63768 TCAGTCAACA----AAGTAGCCGAAGCAATCATCAACTATATCAGTAAACGTGCTGGTAT 63823 || | || || |||| | || | || ||| | |||||||||| || Sbjct 3404 TCCATTAATGCGACAACTAGCT----CTATTGTTAAATATGTTTCCCAACGTGCTGGAAT 3459 Query 63824 CGGTGTTAATGGCGGTGCTATTCGTGCTGAAGGCTCGGTTGTTCGAGCAGGTGAA--ATT 63881 ||| |||||| || ||||| || ||| | || || || ||| ||| Sbjct 3460 TGGTATTAATGCAGGACAAATTCGCGCATTAGGAAGTCCTATTAGAAACGGAGAAGCATT 3519 Query 63882 CGACACACTGGTGTAATCCCATTCTGGAAACACTTTCAGACTGCTGTGAAGTCATGTTCA 63941 || |||||| || || || | ||||| ||||| | ||||| || || ||||| Sbjct 3520 T--CATACTGGTTGTATACCTTTTTATAAACATTTTCAAAGCGCTGTAAAATCTTGTTCT 3577 Query 63942 CAAGGTGGTGTTCGTGGTGGTGCTGCAACGCTAACTTACCCGATTTGGCATTTAGAAGTT 64001 ||||| |||||| | ||||| |||||||| | ||| || || |||||||| |||||| Sbjct 3578 CAAGGAGGTGTTAGAGGTGGAGCTGCAACTATTTTTTATCCAATATGGCATTTTGAAGTT 3637 Query 64002 GAAAAACTTTTGGTGCTGAAGAACAACAAAGGCGTTGAAGAAAACCGTATTCGTCATCTT 64061 ||||| | || || | || ||||||| || |||||||||| | | |||||| | Sbjct 3638 GAAAATTTATTAGTTTTAAAAAACAACAGGGGAATTGAAGAAAATAGAGTACGTCATGTC 3697 Query 64062 GACTA 64066 ||||| Sbjct 3698 GACTA 3702 >seq159469 Length=1977 Score = 116 bits (128), Expect = 6e-21 Identities = 272/404 (67%), Gaps = 16/404 (4%) Strand=Plus/Minus Query 63672 AAACTTTCTTTACCAACCCCGATCATGGCAGGTGTTCGTACGCCAACTCGACAATTTAGC 63731 ||| |||| |||||||| || || ||| | || || || || || ||||| || ||||| Sbjct 1701 AAAATTTCATTACCAACACCCATTATGTCTGGAGTACGAACTCCTACTCGTCAGTTTAGT 1642 Query 63732 TCATGTGTTAAAATCGAATCTGGCGACTCTCTGCATTCAGTCAA--CAA--AGTAGCCGA 63787 || |||||| |||||||| || || | | | || | || | | | |||| Sbjct 1641 TCTTGTGTTTTAATCGAATGTGCTGATAATTTAAACTCTATTAATGCTACTACTAGCT-- 1584 Query 63788 AGCAATCATCAACTAT--ATCAGTAAACGTGCTGGTATCGGTGTTAATGGCGGTGCTATT 63845 | || | || ||| |||| |||||||||| |||||| |||||| || ||| Sbjct 1583 --CTATTGTTAAATATGTATCAC--AACGTGCTGGAATCGGTATTAATGCGGGACAAATT 1528 Query 63846 CGTGCTGAAGGCTCGGTTGTTCGAGCAGGTGAA--ATTCGACACACTGGTGTAATCCCAT 63903 || || ||| | || || |||||| ||| || |||||| || || | Sbjct 1527 CGCGCGTTAGGAAGTCCTATTAGAAACGGTGAAGCATTT--CATACTGGTTGTATACCTT 1470 Query 63904 TCTGGAAACACTTTCAGACTGCTGTGAAGTCATGTTCACAAGGTGGTGTTCGTGGTGGTG 63963 | | ||||||||||| | ||| || || || ||||||||||| || || | || || | Sbjct 1469 TTTATAAACACTTTCAAAGTGCCGTAAAATCCTGTTCACAAGGCGGAGTGAGAGGAGGAG 1410 Query 63964 CTGCAACGCTAACTTACCCGATTTGGCATTTAGAAGTTGAAAAACTTTTGGTGCTGAAGA 64023 ||||||| | ||| || || |||||||| |||||||||| | || || | || | Sbjct 1409 CTGCAACTATTTTTTATCCAATATGGCATTTTGAAGTTGAAAGTTTATTAGTTTTAAAAA 1350 Query 64024 ACAACAAAGGCGTTGAAGAAAACCGTATTCGTCATCTTGACTAC 64067 | || | ||| |||||||||| | | |||||| |||| ||| Sbjct 1349 ATAATAGAGGAATTGAAGAAAATAGAGTGCGTCATATTGATTAC 1306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783234727287600