Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_021534.1 Length=47552 Score E Sequences producing significant alignments: (Bits) Value seq227744 149 2e-31 seq342690 127 6e-25 >seq227744 Length=1455 Score = 149 bits (164), Expect = 2e-31 Identities = 220/309 (71%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 33163 ATTATGGCATCTCGAGGAATCAACAAAGTAATCATT-TTGGGCACTCTCGGACAAGACCC 33221 |||||||| | |||| | || ||||| || || ||||||| | | || ||||| || Sbjct 105 ATTATGGCCAGTAGAGGTGTAAATAAAGTTATTCTTATTGGGCATT-TAGGGCAAGATCC 163 Query 33222 GGAAGTTAAATATATGCCTTCTGGCGGCGCTGTGTGCAATCTGTCTCTGGCAACATCAGA 33281 |||||| |||||||| ||| || || ||| || | | || || ||||| Sbjct 164 TGAAGTTCGTTATATGCCAAATGGTAATGCAGTAGTAAATATGACATTAGCTACTTCAGA 223 Query 33282 GCAGTGGAACGATAAAGCAACAGGGGAAAAGAAAGAGCAGACAGAATGGCATCGCGTGGT 33341 | ||||| |||||| || |||||||| ||||| | |||||||||||||| | || Sbjct 224 AAATTGGAAAGATAAAAACACTGGGGAAAATAAAGAAAAAACAGAATGGCATCGAATAGT 283 Query 33342 TATCTTCGGAAAGCTGGCAGAGGTGGCTGGCGAATACCTGCGCAAAGGCTCTCAGGTGTA 33401 | | || ||||| | ||||| | ||||||||||| || || ||||| ||||| || || Sbjct 284 TTTATTTGGAAAATTAGCAGAAATTGCTGGCGAATATCTTCGAAAAGGTTCTCAAGTATA 343 Query 33402 TGTAGAAGGAAAATTACGTACTCGCAAATGGACAGATCAAAGCGGTGTTGAAAAATACAC 33461 | | |||||| |||| ||| | |||||| |||||||| || ||||| ||||| Sbjct 344 TATTGAAGGATCGTTACAAACTAGAAAATGGCAAGATCAAAATGGACTTGAACGTTACAC 403 Query 33462 TACTGAAAT 33470 ||| ||||| Sbjct 404 TACAGAAAT 412 >seq342690 Length=956 Score = 127 bits (140), Expect = 6e-25 Identities = 217/312 (70%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 33163 ATTATGGCATCTCGAGGAATCAACAAAGTAATCATT-TTGGGCACTCTCGGACAAGACCC 33221 ||||||||| | |||| | || ||||| || || |||| || | | |||||||| || Sbjct 929 ATTATGGCAAGTAGAGGCGTTAATAAAGTTATTCTTATTGGACATT-TAGGACAAGATCC 871 Query 33222 GGAAGTTAAATATATGCCTTCTGGCGGCGCTGTGTGCAATCTGTCTCTGGCAACATCAGA 33281 ||||| |||||||| ||| || || ||| || || | ||||| ||||| Sbjct 870 AGAAGTACGTTATATGCCCAATGGTAATGCAGTAGTAAATATGACTTTAGCAACTTCAGA 811 Query 33282 GCAGTGGAACGATAAAGCAACAGGGGAAAAGAAAGAGCAGACAGAATGGCATCGCGTGGT 33341 | ||||| |||||| || || ||||| ||||| | |||||||||||| | | || Sbjct 810 AAATTGGAAAGATAAAAATACTGGAGAAAATAAAGAAAAAACAGAATGGCATAGAATAGT 751 Query 33342 TATCTTCGGAAAGCTGGCAGAGGTGGCTGGCGAATACCTGCGCAAAGGCTCTCAGGTGTA 33401 | || ||||| | ||||| | || || ||||| || || ||||| ||||| || || Sbjct 750 ATTATTTGGAAAATTAGCAGAAATTGCCGGTGAATATCTTCGAAAAGGTTCTCAAGTATA 691 Query 33402 TGTAGAAGGAAAATTACGTACTCGCAAATGGACAGATCAAAGCGGTGTTGAAAAATACAC 33461 | | |||||| | ||| ||| | |||||| ||| |||| ||| | ||| || || Sbjct 690 TATTGAAGGATCACTACAAACTAGAAAATGGCAAGACCAAAATGGTTTAGAACGTTATAC 631 Query 33462 TACTGAAATCGT 33473 ||| ||||| || Sbjct 630 TACAGAAATTGT 619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150462955359480