Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_021806.1 Length=100418 Score E Sequences producing significant alignments: (Bits) Value seq134303 118 7e-22 seq243337 104 1e-17 >seq134303 Length=2249 Score = 118 bits (130), Expect = 7e-22 Identities = 163/226 (72%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 96157 TGAGCTAATACTGTAGCTGTGGTTGTTCCATCTCCTACTTCTGTATTAGTATTCTCAGCT 96216 || ||||||| ||| ||||| || || ||||| ||| || | ||| | || || Sbjct 1493 TGTGCTAATAATGTTGCTGTTGTAGTACCATCACCTGCTGCATCATTTGCTTTTGATGCA 1552 Query 96217 ACTTGTTTAATCATTTGAGCACCTAAGTTTTCAAATGGATCTTCTAAATGAATTTCTCTA 96276 |||| ||| | ||||||||| || | |||||| ||| ||||||||| | ||||| | | Sbjct 1553 ACTTCTTTTACCATTTGAGCTCCCATGTTTTCGAATTTATCTTCTAATTCGATTTCACGA 1612 Query 96277 GCCACACTTACACCATCTTTAGTAATGATTG--GATTATACTGGTCTAAACCTAGTATAA 96334 ||||| |||||||||||||||||| | | | | | | | | | |||| | || Sbjct 1613 GCCACTGATACACCATCTTTAGTAATACTAGGTGCTCCAAAAGATTT--ATCTAGAACAA 1670 Query 96335 CATTCTTACCTGATGGTCCTAGAGTTACTTTAACTGCATTAGCTAA 96380 |||| ||||| ||| |||| ||||||||||||||||| ||||| Sbjct 1671 CATTTCTACCTTTTGGCCCTAAAGTTACTTTAACTGCATCTGCTAA 1716 >seq243337 Length=1366 Score = 104 bits (114), Expect = 1e-17 Identities = 177/258 (69%), Gaps = 14/258 (5%) Strand=Plus/Plus Query 96130 GCTTTAAAGCCTTCTTCTAGAATTTTCTGAGCTAATACTGTAGCTGTGGTTGTTCCATCT 96189 ||||| || ||||| | || || || ||||||| ||| ||||| || || || ||| Sbjct 585 GCTTTTAAACCTTCATTTACTATAGATTGTGCTAATAATGTTGCTGTTGTAGTACCGTCT 644 Query 96190 CCTACTTCTGTATTAGTATTCTCAGCTACTTGTTTAATCATTTGAGCACCTAAGTTTTCA 96249 ||| || | ||| | || || |||| ||| | ||||||||| || | |||||| Sbjct 645 CCTGCTGCATCATTTGCTTTTGATGCAACTTCTTTTACCATTTGAGCTCCCATGTTTTCG 704 Query 96250 AATGGATCTTCTAAATGAATTTCTCTAGCCACACTTACACCATCTTTAGTAATGATTGGA 96309 ||| ||||||||| | || || | ||| ||| ||||||||||| || || | || Sbjct 705 AATTTATCTTCTAATTCGATCTCACGAGCTACAGAAACACCATCTTTGGTGATACTAGG- 763 Query 96310 TTATACTGGTCTAAA-------CCTAGTATAACATTCTTACCTGATGGTCCTAGAGTTAC 96362 || || ||| |||| | |||||| |||| |||||||||||| || Sbjct 764 ------TGCTCCAAAAGATTTGTCTAGAACAACATTTCTACCCTTTGGTCCTAGAGTCAC 817 Query 96363 TTTAACTGCATTAGCTAA 96380 ||||||||||| ||||| Sbjct 818 TTTAACTGCATCTGCTAA 835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 317783021218090