Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq48246 194 2e-43 seq107321 178 2e-38 seq649695 150 2e-30 >seq48246 Length=4099 Score = 194 bits (214), Expect = 2e-43 Identities = 223/295 (76%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 869633 gAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| ||||||||||| |||||||| ||||| ||||| | | |||| || ||||| Sbjct 1877 GAGTGGATATTCTCGATGGCAATCTGGAATCCGTAGAAGGCACGCGCCTCCGCAACTTGA 1936 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||||||| || ||||| ||||| || |||||||| ||| ||||||||| Sbjct 1937 ACCTCTTTCATGAATCGTCCGGCTAGGTTTTCCAAAACGATGCCATCGGAGGCGGCGAAG 1996 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| |||||||||| | |||| |||| | | ||| |||||| |||| Sbjct 1997 AAGGCAAGGACGTGAGTGATAAAGTGCCTCTCGCCGTCTGTCAACGAGTCCCAGT-GACG 2055 Query 869813 GTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 || || | | || ||||| ||||| ||||| | ||| || ||||| || ||||| Sbjct 2056 TTGATCTTCAGACAAATCGACCTCTTCGGCTGTCCAAAACGAAGCTTCGGCTTTCTTGTA 2115 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTT 869925 ||| ||||| | ||| |||| | || ||||| | ||| ||||| | ||||| Sbjct 2116 CATTTCCCAAATTTGAGGGTACTGAATTGGGAACA-TACAGAAGCGATCTGGGTT 2169 >seq107321 Length=2628 Score = 178 bits (196), Expect = 2e-38 Identities = 207/275 (75%), Gaps = 6/275 (2%) Strand=Plus/Minus Query 869633 gAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||| ||||||||||| ||||| ||||| | | |||| || |||||| Sbjct 994 GAGTGGATGTTCTCGATTGCGATCTGGAATCCGTAGAAGGCACGCGCCTCCGCAACTTGG 935 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| ||||||||||| ||||| ||||| || ||||| || ||| ||||||||| Sbjct 934 ACCTCTTTCATGAACCGTCCGGCGAGGTTTTCCAATACGATTCCATCGGAGGCGGCGAAG 875 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| |||| |||| | |||| | ||||| || |||| | |||| Sbjct 874 AATGCGAGGACGTGAGTGATGAAGTACCTCTCGCCATCGCTTAGGTTGTCCCACT-GACG 816 Query 869813 GT-GTCGGCGCTG--AGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | ||| | || | || |||||||| || ||||| | || || || || |||||| Sbjct 815 CTGGTC--CTGTGACAAATCAACCTCCTCCGCCGTCCAAAATGAAGCTTCTGCTTTTTTG 758 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 ||||| ||||| | || |||| |||| ||||| Sbjct 757 TACATTTCCCAGATCTGAGGGTATTGGATTGGGAA 723 Score = 104 bits (114), Expect = 3e-16 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233 ||| |||| ||||| || ||||| |||||| || | || || ||||| || || Sbjct 1279 TGCAAACCCTCGTCTCGCGAGATCAATTCGTTCGAGAATGTTAGCCCTGGCATAAGCCCT 1220 Query 869234 CGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCG 869293 || || |||||||| || ||||||||||||||||| ||||| ||||| || |||||| Sbjct 1219 CGTTTTTTGAGCCAGAATATGGCGCAGAAACTGCCGGAGAAGAAGATACCTTCGACGCAA 1160 Query 869294 GCAAAGCCGATGAGCCGCTCGGCAAAGGTGTC 869325 || || |||||| ||| || || ||||| || Sbjct 1159 GCGAAAGCGATGATCCGTTCTGCGAAGGTTTC 1128 >seq649695 Length=433 Score = 150 bits (166), Expect = 2e-30 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| ||| ||| || || || || |||||||||||||| || | | || Sbjct 47 GCTTGGCCAATTCTCCGGGCAGGAGGAGACGGACAGCGGTCTGGATCTCCCGAGAGGTGA 106 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| | |||||| |||| || ||||||| |||||||| | |||| | |||| | Sbjct 107 TGGTGGACCTCTTGTTGTAGTGGGCAAGACGGCTGGCCTCGGCGGCGATCCTCTCGAAGA 166 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||||| | |||| ||||||| || |||||||| Sbjct 167 TGTCGTTCACGAACGAGTTCATGATGGACATGGCCTTGCTGGAGATACCGGTGTCGGGGT 226 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | || || || ||||| ||||| ||| Sbjct 227 GGACTTGTTTCAGCACTTTGTAAATG 252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6035241510576870