Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_021867.1 Length=46978 Score E Sequences producing significant alignments: (Bits) Value seq585092 91.5 4e-14 seq141754 87.8 5e-13 >seq585092 Length=494 Score = 91.5 bits (100), Expect = 4e-14 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 39897 CACAATACATCTGTAAAATAAAATTCTGCGTAAGCTATTTGCCATAACAGAAAATTACTA 39956 || || ||||| || ||||| ||||| | |||||||||| |||||| | |||||||||| Sbjct 351 CATAAAACATCAGTGAAATATAATTCAGAATAAGCTATTTCCCATAATAAAAAATTACTA 292 Query 39957 ATGCGGTGTTCGCCACTTGTTCTTATTACTAAATCTAC 39994 || | | ||| |||| |||||| || ||||||||||| Sbjct 291 ATTCTTTTTTCTCCACCTGTTCTAATAACTAAATCTAC 254 >seq141754 Length=2162 Score = 87.8 bits (96), Expect = 5e-13 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 39897 CACAATACATCTGTAAAATAAAATTCTGCGTAAGCTATTTGCCATAACAGAAAATTACTA 39956 || || | ||| |||||||| ||||| | ||||||||||||||||| | |||||||||| Sbjct 180 CATAAAATATCAGTAAAATATAATTCAGAATAAGCTATTTGCCATAATAAAAAATTACTA 239 Query 39957 ATGCGGTGTTCGCCACTTGTTCTTATTACTAAATCTAC 39994 || | | ||| || | ||||||||| || || ||||| Sbjct 240 ATTCTTTTTTCTCCTCCTGTTCTTATAACCAAGTCTAC 277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148645265070800