Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq27206 104 2e-17 seq102355 102 7e-17 seq78250 95.1 1e-14 seq86036 91.5 1e-13 seq50039 86.0 5e-12 seq48514 86.0 5e-12 seq75854 84.2 2e-11 >seq27206 Length=5223 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||||||||| | |||||||| ||||||||| | ||| ||| | Sbjct 3285 ATGCAGATCTTTGTCAAAACCCTCACCGGCAAGACCATTACCTTGGAAGTCGAGAGTTCT 3226 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || ||| ||||| || || ||||| | ||| ||||| Sbjct 3225 GATACAATCGACAACGTTAAAGCAAAGATCCAGGATAAGGAAGGGATCCCCCCTGATCAG 3166 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| || || | || || |||||| |||| || | |||||| | ||||||||||| Sbjct 3165 CAAAGGCTCATATTCGCCGGGAAACAGTTGGAAGACGGCAGAACCCTAGCGGATTACAAT 3106 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||| || ||||| || Sbjct 3105 ATTCAGAAGGAATCGAC 3089 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || ||||| || |||||||| ||||| || || | || || | Sbjct 3058 AATGCAGATCTTCGTCAAGACGTTAACCGGGAAAACAATCACTCTAGAGGTTGAAAGTTC 2999 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| ||| | | || || |||||| ||||||||||| | || |||||| Sbjct 2998 TGATACGATCGACAATGTCAAGGCTAAGATTCAAGACAAAGAAGGGATTCCACCGGATCA 2939 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | || || | ||| || || ||| |||| |||| ||||| | || ||||| || Sbjct 2938 ACAGCGTCTGATCTTTGCCGGGAAGCAGTTGGAAGATGGTAGAACTTTAGCTGATTATAA 2879 Query 110452 CATTCAAAAAGAATCTACGTTGCA 110475 ||||||||| ||||| || ||||| Sbjct 2878 CATTCAAAAGGAATCGACTTTGCA 2855 >seq102355 Length=2708 Score = 102 bits (112), Expect = 7e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 110265 GATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGG 110324 || || | ||||| || ||||| ||||| |||| || || || || || ||||| | Sbjct 621 GAATTTAGATGCAGATTTTTGTGAAAACCCTAACGGGGAAGACGATAACTCTCGAAGTCG 680 Query 110325 AGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCG 110384 || | |||||| ||| | | || ||| |||||| ||||| ||||| | || Sbjct 681 AGAGTTCCGATACGATCGACAATGTTAAAACGAAGATACAGGACAAGGAAGGAATTCCTC 740 Query 110385 TGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGG 110444 |||||||||| | ||||| | || ||||||||||| || || | | | || | || | Sbjct 741 CGGATCAACAACGTCTTATCTTCGCCGGTAAACAGCTCGAAGACGGCCGTACTCTCGCCG 800 Query 110445 ATTACAACATTCAAAAAGAATCTACG 110470 ||||||| || ||||||||||| ||| Sbjct 801 ATTACAATATCCAAAAAGAATCGACG 826 >seq78250 Length=3191 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/197 (71%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||| | || |||||||| | |||||||||||||||||| | || ||| | Sbjct 647 ATGCAA-TCTTCGTCAAAACCCTCACCGGCAAAACCATTACCTTAGAGGTCGAGAGTTCG 705 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | || ||| |||||| ||||||||||| | || ||||| Sbjct 706 GATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGTATTCCTCCTGATCAG 765 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| || |||| | || || ||| ||||||||| ||||| ||||||| ||||| Sbjct 766 CAAAGGCTCATTTTCTCCGGCAAGCAGTTGGAGGATGGAAGAACCCTGGCGGACTACAAT 825 Query 110453 ATTCAAAAAGAATCTAC 110469 || || || ||||| || Sbjct 826 ATCCAGAAGGAATCCAC 842 >seq86036 Length=3019 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| ||||| ||||||| || || ||||| | ||| ||| | | Sbjct 1121 ATGCAGATCTTTGTGAAAACCCTAACCGGTAAGACGATTACTCTTGAAGTCGAGAGTTCC 1062 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || ||| |||||| ||||| ||||| | || |||||| Sbjct 1061 GATACGATCGACAATGTGAAAACGAAGATACAGGACAAGGAAGGAATCCCTCCAGATCAA 1002 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | ||||| | || ||||||||||| || || | | | || | || |||||||| Sbjct 1001 CAACGTCTTATCTTCGCCGGTAAACAGCTCGAAGACGGCCGTACTCTCGCCGATTACAAT 942 Query 110453 ATTCAAAAAGAATCTACG 110470 || || || ||||| ||| Sbjct 941 ATACAGAAGGAATCGACG 924 >seq50039 Length=4031 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || ||||| ||||||| |||||||| ||| | || || | | Sbjct 1214 ATGCAGATTTTCGTAAAAACCCTAACCGGGAAAACCATCACCCTAGAGGTAGAATCCTCC 1155 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || ||| ||| || ||||| |||||| | || |||||| Sbjct 1154 GACACCATCGACAATGTCAAAGCGAAAATCCAAGACAAGGAAGGCATCCCACCGGATCAG 1095 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | || | || || |||||||||||||| | |||||| | || || |||||| Sbjct 1094 CAACGTCACATCTTCGCCGGAAAACAGCTGGAGGACGACAGAACCCTAGCCGACTACAAC 1035 Query 110453 ATTCAAAAAGAATCTAC 110469 || || || ||||| || Sbjct 1034 ATCCAGAAGGAATCCAC 1018 >seq48514 Length=4088 Score = 86.0 bits (94), Expect = 5e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 |||||||| || ||||| | ||| || || ||||| || |||| ||||| |||| ||| Sbjct 2826 GATCAACAGAGGCTTATATTTGCTGGGAAGCAGCTTGAAGATGAGAGAACTTTGGCTGAT 2767 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCAC 110476 |||||||||||||| ||||| || |||||| Sbjct 2766 TACAACATTCAAAAGGAATCAACTTTGCAC 2737 >seq75854 Length=3247 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || || || || ||||| || ||||| || || | || || | Sbjct 2568 AATGCAGATCTTCGTTAAGACGTTAACTGGAAAAACAATCACATTGGAGGTTGAAAGTTC 2509 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| ||| | | || || ||||| ||||||||||| | || |||||| Sbjct 2508 TGATACGATCGACAATGTGAAGGCTAAGATACAGGACAAAGAAGGGATTCCACCGGATCA 2449 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | || || | ||| || || ||| ||||||||| ||||| | || ||||| || Sbjct 2448 ACAGCGTCTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTAGAACTTTAGCCGATTATAA 2389 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAG 110487 ||| ||||| ||||| || ||||| |||| || || Sbjct 2388 CATCCAAAAGGAATCGACTTTGCATCTGGTTTTGAG 2353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408433446402230