Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq649695 178 2e-38 seq107321 138 2e-26 >seq649695 Length=433 Score = 178 bits (196), Expect = 2e-38 Identities = 185/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| || || || || |||||| |||||| ||| ||| ||| Sbjct 8 TGTACTTGGTCACAGCCTTGGTGCCTTCAGACACAGCGTGCTTGGCCAATTCTCCGGGCA 67 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || || |||||||||||||| || | | ||| ||| | |||||| | Sbjct 68 GGAGGAGACGGACAGCGGTCTGGATCTCCCGAGAGGTGATGGTGGACCTCTTGTTGTAGT 127 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || |||| |||||||| | |||| | |||| |||||||| || |||||||||| Sbjct 128 GGGCAAGACGGCTGGCCTCGGCGGCGATCCTCTCGAAGATGTCGTTCACGAACGAGTTCA 187 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| | ||| ||||||| || ||||||||| || || || ||||| |||| Sbjct 188 TGATGGACATGGCCTTGCTGGAGATACCGGTGTCGGGGTGGACTTGTTTCAGCACTTTGT 247 Query 1485710 AAA 1485712 ||| Sbjct 248 AAA 250 >seq107321 Length=2628 Score = 138 bits (152), Expect = 2e-26 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | ||||||||||| |||||||| || ||||| ||||| || ||||| || Sbjct 949 GCCTCCGCAACTTGGACCTCTTTCATGAACCGTCCGGCGAGGTTTTCCAATACGATTCCA 890 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||||||||| || ||||||||||| |||| |||| | |||| | ||||| || Sbjct 889 TCGGAGGCGGCGAAGAATGCGAGGACGTGAGTGATGAAGTACCTCTCGCCATCGCTTAGG 830 Query 796270 GAGACCCAGTGGACCGTGT-CGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 | |||| || | || | | | | | || |||||||| || |||||||| || || Sbjct 829 TTGTCCCACTGACGCTGGTCCTGTGAC-AAATCAACCTCCTCCGCCGTCCAAAATGAAGC 771 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 || || ||||||||||| ||||| ||| | |||| |||| ||||||| Sbjct 770 TTCTGCTTTTTTGTACATTTCCCAGATCTGAGGGTATTGGATTGGGAACA 721 Score = 123 bits (136), Expect = 4e-22 Identities = 223/325 (69%), Gaps = 6/325 (2%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| || |||||||||||| || || || ||||| || || || || Sbjct 1274 ACCCTCGTCTCGCGAGATCAATTCGTTCGAGAATGTTAGCCCTGGCATAAGCCCTCGTTT 1215 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 |||||||| || ||||| ||||||||||| ||||| ||||| || |||||| || || Sbjct 1214 TTTGAGCCAGAATATGGCGCAGAAACTGCCGGAGAAGAAGATACCTTCGACGCAAGCGAA 1155 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 ||| || ||| || || || || | ||| || | |||||| | | ||||| Sbjct 1154 AGCGATGATCCGTTCTGCGAAGGT-TTCAGATCC-----ATCGATCCATCTGAGGGCCCA 1101 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 | || || ||| | | || | || ||||| |||||||| || |||||| Sbjct 1100 TTTAGCTTTCTTCTGGATGCAAGGGATGGTATCGATTGCGCGAAACAGCCTACTCTTCTC 1041 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 | | ||| |||| ||| | |||| || || ||| |||| ||||||||||| || Sbjct 1040 GTTGGAGTCTTTGATGTATGATTCGAGAAGCAGACTGTACATCTCGGAGTGGATGTTCTC 981 Query 794640 GATGGCGATCTGGAAGCCATAAAAG 794664 ||| ||||||||||| || || ||| Sbjct 980 GATTGCGATCTGGAATCCGTAGAAG 956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7823050583362290