Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_022772.1 Length=156338 Score E Sequences producing significant alignments: (Bits) Value seq30067 127 2e-24 seq159469 111 2e-19 >seq30067 Length=5021 Score = 127 bits (140), Expect = 2e-24 Identities = 269/399 (67%), Gaps = 2/399 (1%) Strand=Plus/Plus Query 104948 CCAACACCCATCATGTCCGGCGTTCGTACCCCAACCCGCCAATTCAGTTCTTGTGTTCTT 105007 |||||||| || ||||| || || | || || || || ||||| |||||||||||| | Sbjct 3320 CCAACACCAATTATGTCTGGAGTCAGAACTCCTACTCGTCAATTTAGTTCTTGTGTTTTA 3379 Query 105008 ATCAAAACCGGTGACACTTTGGACTCAATCAATGCTACAGCCAAAAGTATTGTTGATTAT 105067 || || | ||| | ||| | || || ||||| ||| | | ||||||| | ||| Sbjct 3380 ATTGAATGTGCTGATAATTTAAATTCCATTAATGCGACAACTAGCTCTATTGTTAAATAT 3439 Query 105068 GTATCCAAACGCGCTGGGATCGGATTTGATGTCGGAGCAATTCGTGGCATCGGTAGCCCT 105127 || ||| |||| ||||| || || || ||| ||| |||||| | | || || ||| Sbjct 3440 GTTTCCCAACGTGCTGGAATTGGTATTAATGCAGGACAAATTCGCGCATTAGGAAGTCCT 3499 Query 105128 ATCCGAAAAGGTGAAATGGTGCACACAGGTCTGGTTCCTTTCATAAAATATCTGACTGGG 105187 || |||| || ||| | || || ||| | ||||| ||| || | | Sbjct 3500 ATTAGAAACGGAGAAGCATTTCATACTGGTTGTATACCTTTTTATAAACATTTTCAAAGC 3559 Query 105188 GCATTAAAGTCTTGCTCTCAAGGCGGTATTCGTGGCGGATCAGCAACT-TGCTATATCCC 105246 || |||| ||||| |||||||| ||| || | || ||| | |||||| | | ||| || Sbjct 3560 GCTGTAAAATCTTGTTCTCAAGGAGGTGTTAGAGGTGGAGCTGCAACTATTTTTTAT-CC 3618 Query 105247 TATCTGGCATTATCAATTTGATGATGTTGTGGTCCTGAAGAACAACCGTGGTCTTGAAGA 105306 || ||||||| | || |||| || | | || | || |||||| | || ||||||| Sbjct 3619 AATATGGCATTTTGAAGTTGAAAATTTATTAGTTTTAAAAAACAACAGGGGAATTGAAGA 3678 Query 105307 GAACCGTGAACGCCGTATCGACTATGGTATTCAGATCAA 105345 || | | ||| | | ||||||||| ||||| || || Sbjct 3679 AAATAGAGTACGTCATGTCGACTATGCAATTCAAATTAA 3717 >seq159469 Length=1977 Score = 111 bits (122), Expect = 2e-19 Identities = 221/322 (69%), Gaps = 4/322 (1%) Strand=Plus/Minus Query 104948 CCAACACCCATCATGTCCGGCGTTCGTACCCCAACCCGCCAATTCAGTTCTTGTGTTCTT 105007 ||||||||||| ||||| || || || || || || || || || |||||||||||| | Sbjct 1689 CCAACACCCATTATGTCTGGAGTACGAACTCCTACTCGTCAGTTTAGTTCTTGTGTTTTA 1630 Query 105008 ATCAAAACCGGTGACACTTTGGACTCAATCAATGCTACAGCCAAAAGTATTGTTGATTAT 105067 ||| || | ||| | ||| |||| || |||||||| | | ||||||| | ||| Sbjct 1629 ATCGAATGTGCTGATAATTTAAACTCTATTAATGCTACTACTAGCTCTATTGTTAAATAT 1570 Query 105068 GTATCCAAACGCGCTGGGATCGGATTTGATGTCGGAGCAATTCGTGGCATCGGTAGCCCT 105127 ||||| |||| ||||| ||||| || ||| ||| |||||| | | || || ||| Sbjct 1569 GTATCACAACGTGCTGGAATCGGTATTAATGCGGGACAAATTCGCGCGTTAGGAAGTCCT 1510 Query 105128 ATCCGAAAAGGTGAAATGGTGCACACAGGTCTGGTTCC-TTTCATAAAATATCTGACTGG 105186 || |||| |||||| | || || ||| | || ||| ||||| | | | | Sbjct 1509 ATTAGAAACGGTGAAGCATTTCATACTGGTTGTATACCTTTTTATAAACACTTTCA-AAG 1451 Query 105187 GGCATTAAAGTCTTGCTCTCAAGGCGGTATTCGTGGCGGATCAGCAACT-TGCTATATCC 105245 || |||| || || || |||||||| | | || ||| | |||||| | | ||| | Sbjct 1450 TGCCGTAAAATCCTGTTCACAAGGCGGAGTGAGAGGAGGAGCTGCAACTATTTTTTAT-C 1392 Query 105246 CTATCTGGCATTATCAATTTGA 105267 | || ||||||| | || |||| Sbjct 1391 CAATATGGCATTTTGAAGTTGA 1370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494676230368800