Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq27206 104 2e-17 seq40887 98.7 8e-16 seq107820 86.0 5e-12 seq75854 86.0 5e-12 seq57017 86.0 5e-12 seq102355 82.4 6e-11 seq78250 82.4 6e-11 >seq27206 Length=5223 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||||||||| | || ||||| ||||||||| | ||| ||| | Sbjct 3285 ATGCAGATCTTTGTCAAAACCCTCACCGGCAAGACCATTACCTTGGAAGTCGAGAGTTCT 3226 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || ||| |||||| ||||| ||||| | ||| |||||| Sbjct 3225 GATACAATCGACAACGTTAAAGCAAAGATCCAGGATAAGGAAGGGATCCCCCCTGATCAG 3166 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || || || || | || || |||||| |||| |||| || ||| | ||||| ||||| Sbjct 3165 CAAAGGCTCATATTCGCCGGGAAACAGTTGGAAGACGGCAGAACCCTAGCGGATTACAAT 3106 Query 107736 ATTCAAAAGGAGTCTAC 107752 ||||| ||||| || || Sbjct 3105 ATTCAGAAGGAATCGAC 3089 >seq40887 Length=4418 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| || || || || || |||||||||||| | ||| || ||| Sbjct 2757 ATGCAGATCTTTGTGAAGACCTTGACCGGAAAAACCATTACCTTGGAAGTTGAAAGCTC- 2815 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || ||| |||||| ||||| ||||| | || ||| || Sbjct 2816 CGACACCATCGATAATGTGAAAGCAAAGATCCAAGATAAGGAAGGGATCCCACCGGACCA 2875 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | || || |||||| ||||||||| | || |||| |||||||| Sbjct 2876 GCAGAGGCTTATCTTCGCCGGAAAACAGTTGGAGGACGGCCGGACGTTGGCCGACTACAA 2935 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 2936 CATCCAGAAGGAGTCGAC 2953 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| ||||| || || || ||||| || ||| | ||| ||| ||| Sbjct 2529 ATGCAGATCTTTGTGAAAACCTTGACCGGAAAAACAATCACCTTGGAAGTGGAAAGCTC- 2587 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | | || ||| || ||| || || ||||| | ||| || || Sbjct 2588 CGACACCATTGACAACGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCA 2647 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| | || || | || || |||||||| ||||||| | ||| |||||||||| || Sbjct 2648 GCAACGTCTCATCTTCGCCGGAAAACAGCTCGAGGACGGCCGGACATTGGCGGACTATAA 2707 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || ||||||||||| Sbjct 2708 CATCCAGAAGGAGTCTAC 2725 >seq107820 Length=2620 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| || || || ||||| |||| || || || ||||| | || || | Sbjct 2253 AAAATGCAGATCTTCGTGAAAACCCTAACTGGGAAGACGATTACGTTGGAGGTTGAATCC 2194 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||| || ||| | | || || ||||| || || |||||| | || ||| Sbjct 2193 TCCGACACAATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCGGAC 2134 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | ||||||| || || ||||| || ||||||| || ||| | || |||||| Sbjct 2133 CAGCAGCGTCTTATTTTCGCCGGGAAACAACTTGAGGACGGCAGAACCCTTGCCGACTAC 2074 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| || |||||||| || | ||| |||| Sbjct 2073 AACATCCAGAAGGAGTCAACCCTCCACCTGGT 2042 >seq75854 Length=3247 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||||||||| || || ||||| || || || || | || ||| ||| | Sbjct 2339 ATGCAGATTTTTGTCAAGACATTGACAGGGAAGACGATCACTCTAGAGGTTGAGAGCTCG 2280 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | || || ||||||| ||||| || || | || ||||| Sbjct 2279 -GACACCATTGATAATGTGAAGGCAAAGATTCAGGATAAGGAGGGTATTCCACCTGATCA 2221 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| || || ||||| || || | | || |||| || ||||| Sbjct 2220 GCAGAGGCTTATATTTGCTGGGAAGCAGCTTGAAGATGGGAGGACTTTGGCTGATTACAA 2161 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||||||||||||| || |||||| | || ||| Sbjct 2160 TATTCAAAAGGAGTCCACTTTGCACCTTGTCTTG 2127 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || |||||||| | || || || || |||||| | ||| ||| | Sbjct 2795 ATGCAGATCTTCGTCAAAACCCTCACCGGTAAGACAATTACCTTAGAAGTCGAGAGTTCT 2736 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || ||| |||||| ||||||||||| | || |||||| Sbjct 2735 GATACAATCGACAACGTCAAAGCCAAGATTCAGGATAAAGAAGGTATTCCTCCTGATCAG 2676 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | || || || ||| | || || | || ||| | ||||||||||| Sbjct 2675 CAGAGACTCATATTCGCCGGAAAGCAGTTAGAAGATGGCAGAACCTTAGCGGACTACAAT 2616 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || ||||| || || Sbjct 2615 ATCCAGAAGGAATCCAC 2599 >seq57017 Length=3783 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||||| | || ||||| |||||||| | || || | Sbjct 1286 ATGCAGATCTTCATCAAAACCCTCACCGGCAAGACCATTACGTTGGAGGTCCAGAGTCCA 1227 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || || |||||| ||| || ||||| | || |||||| Sbjct 1226 GATACCATCGACAAAGTCAAGGCCAAGATTCACGACAAGGAAGGTATTCCTCCTGATCAG 1167 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || || ||||||| || || || ||| |||| || | |||||| || |||||||||| Sbjct 1166 CAAAGGCTTATTTTCGCCGGAAAGCAGTTGGAAGAAGGCAAAACCCTGTCGGACTACAAT 1107 Query 107736 ATTCAAAAGGAGTCTAC 107752 ||||||||||| || || Sbjct 1106 ATTCAAAAGGAATCCAC 1090 >seq102355 Length=2708 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || |||||||| | || || || || || || | || |||| ||| | Sbjct 857 ATGCAAATCTTCGTCAAAACCCTGACCGGAAAGACGATCACGTTGGAGGTGGAGAGCTCG 916 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || ||||||| || || ||||| | || ||||| Sbjct 917 -GACACAATCGACAACGTGAAGACAAAGATTCAAGACAAGGAAGGAATCCCTCCCGATCA 975 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| | || || | || ||||||||||| ||||||| | || | || |||||||| Sbjct 976 GCAACGTCTCATCTTCGCCGGTAAACAGCTTGAGGACGGCCGTACCCTCGCCGACTACAA 1035 Query 107735 CATTCAAAAGGAGTCTACG 107753 ||| ||||||||||| ||| Sbjct 1036 CATCCAAAAGGAGTCAACG 1054 >seq78250 Length=3191 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||| | || |||||||| | || ||||||||||||||| | || ||| | Sbjct 647 ATGCAA-TCTTCGTCAAAACCCTCACCGGCAAAACCATTACCTTAGAGGTCGAGAGTTCG 705 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || ||| |||||| || |||||||| | || |||||| Sbjct 706 GATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGTATTCCTCCTGATCAG 765 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || || || |||| | || || ||| ||||||| | | ||| ||||||||||||| Sbjct 766 CAAAGGCTCATTTTCTCCGGCAAGCAGTTGGAGGATGGAAGAACCCTGGCGGACTACAAT 825 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || ||||| || || Sbjct 826 ATCCAGAAGGAATCCAC 842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394617756819790